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Dr Constantino Carlos Reyes Aldasoro

Senior Lecturer

School of Science & Technology Department of Computer Science

Contact details

Address

Dr Constantino Carlos Reyes Aldasoro A401B, College Building
City, University of London
Northampton Square
London EC1V 0HB
United Kingdom

About

Overview

I am a Senior Lecturer at the School of Mathematics, Computer Science and Engineering at City, University of London. I work in the Department of Computer Science and I am affiliated to the giCentre.

My overall objective is to shed some light into the causes and processes of human illnesses especially Cancer, and the infection or inflammation processes related to these diseases. To do this, I apply a variety of techniques, from traditional image processing, to visualisation to artificial intelligence to extract meaningful information from biological and medical experimentation and data sets. By analysing images, videos or data sets (for instance the PubMed database), I hope to contribute in finding ways to cure and prevent diseases or improve the way these are treated.

Personal Website

http://www.staff.city.ac.uk/~sbbk034/

Linked-In

https://www.linkedin.com/in/constantino-carlos-reyes-aldasoro-090b822b/

Twitter

https://twitter.com/C_ReyesAldasoro

GitHub

https://github.com/reyesaldasoro

Qualifications

  • PGCert HE, University of Sussex, United Kingdom, 2012
  • PhD, University of Warwick, United Kingdom, Jan 2001 – Feb 2005
  • MSc, Imperial College London, United Kingdom, Oct 1993 – Sep 1994
  • BSc, Universidad Nacional Autonoma de Mexico, Mexico, Nov 1987 – Aug 1993

Employment

  • Executive Committee Member: Vision and Imaging Network, Institution of Engineering and Technology, Feb 2019 – present
  • Senior Lecturer in Biomedical Image Analysis, City, University of London, Sep 2015 – present
  • Executive Committee Member, British Association for Cancer Research, Nov 2013 – Nov 2016
  • Lecturer in Biomedical Image Analysis, City University London, Jul 2013 – Sep 2015
  • Lecturer in Biomedical Engineering, University of Sussex, May 2011 – Jun 2013
  • Research Fellow, University of Sheffield, Jan 2009 – Apr 2013
  • Postdoctoral Research Associate, University of Sheffield, Feb 2005 – Dec 2008
  • Graduate Teaching Assistant, University of Warwick, 2001 – 2004
  • Associate Professor, Instituto Tecnológico Autónomo de México, 1998 – 2000
  • Visiting Researcher, Massachusetts Institute of Technology, 1997
  • Assistant Professor, Instituto Tecnológico y de Estudios Superiores de Monterrey, 1996 – 1997

Fellowships

  • Higher Education Academy, Nov 2012 – present

Memberships of professional organisations

  • Senior Member, Institute of Electrical and Electronic Engineers (IEEE), Nov 2011 – present
  • Member of the Executive Committee, British Association for Cancer Research (BACR), Apr 2005 – present
  • Member, British Machine Vision Association (BMVA)
  • Secretary of the Steering Committee, Medical Image Understanding & Analysis (MIUA)

Languages

English (can read, write, speak, understand spoken and peer review), French (can read, write, speak and understand spoken), Italian (can read, speak and understand spoken) and Spanish; Castilian (can read, write, speak, understand spoken and peer review).

Research

Research Interests

My area of research is Image Analysis of Biomedical Images. This research covers three particular areas:

* the acquisition (I have worked with light and fluorescent microscopes as well as access to confocal and multiphoton microscopes) of biomedical images,
* the analysis of these images or videos through algorithms, mathematical models and statistical methodologies, which provide quantitative measurements, and
* the interpretation of the data (2D images, 3D volumes, 2D+t videos, 3D+t volumetric time lapse data sets).

This final stage is crucial, what conclusions can we draw from the images? Can we reveal something of the underlying biological processes of cells or tumours? What are the effects of drugs or treatments? By using image analysis we are able to extract a wealth of information that is present in the images we capture, and that it is not possible to obtain by simple qualitative analysis.

My overall objective is to shed some light into the causes and processes of human illnesses especially cancer, and the infection or inflammation processes related to this diseas. By analysing the images and videos from many experiments I hope to and contribute in finding ways to cure and prevent them.

I have analysed different biological processes - cell migration, vascular permeability, red cell velocity, inflammation - and this research has lead to more than 25 journal papers.

I have developed Image Analysis algorithms and software for the following experiments:

- Tracking of fluorescently labelled Red Blood Cells.
- Quantification of vascular permeability to FITC-Dextran in tumours.
- Measurement of cell migration in vitro.
- Geometrical analysis of vessels from immunohistochemistry images stained for CD-31.
- Topological analysis of tumour vasculature in light microscopy images.
- Measurement of fluorescence intensity for vessel and perfusion quantification.

Research Website

My personal website contains more details of my research, software and teaching interests:


http://staff.city.ac.uk/~sbbk034/

Research students

Ananda

Attendance: Oct 2018 – Sep 2021, full-time

Thesis title: Analysis of Wrist Fractures from X-Ray images

Role: 1st Supervisor

Cefa Karabag

Attendance: Oct 2017 – present, part-time

Thesis title: Analysis of HeLa Cells observed with 3D Electron Microscopy

Role: 1st Supervisor

Jose Alonso Solis-Lemus

Attendance: Jan 2015 – Dec 2018, full-time

Thesis title: Segmentation and Shape Tracking of Overlapping Macrophages in Fluorescent Microscopy Images

Role: 1st Supervisor

Nathan Olliverre

Thesis title: Using Computer Vision and Machine Learning for the Advancement in Classification of Brain Tumours from Magnetic Resonance Spectroscopy Imaging.

Role: 2nd Supervisor

Muhammad Moazzam Jawaid

Thesis title: Detection, Localization and Quantification of Non-Calcified Coronary Plaques in Contrast Enhanced CTA

Role: 2nd Supervisor

Stefanos Leandrou

Thesis title: Quantitative Texture analysis on MRI imaging in the assessment of Alzheimer’s Disease

Role: 2nd Supervisor

Mauricio Ortega

Thesis title: Analysis of Histopathology Images

Role: 1st Supervisor

Konstantinos Blazakis

Thesis title: Computational methods for investigating cell motility with applications to neutrophil cell migration

Further information: PhD University of Sussex

Tengfei Yin

Thesis title: A Robust and Artifact Resistant Algorithm of Ultrawideband Imaging System for Breast Cancer Detection

Further information: PhD awarded 2015 University of Sussex

Publications

Featured publications

  1. Kather, J.N., Krisam, J., Charoentong, P., Luedde, T., Herpel, E., Weis, C.-.A. … Halama, N. (2019). Predicting survival from colorectal cancer histology slides using deep learning: A retrospective multicenter study. PLOS Medicine, 16(1), pp. 1–1. doi:10.1371/journal.pmed.1002730.
  2. Reyes-Aldasoro, C.C. (2017). The proportion of cancer-related entries in PubMed has increased considerably; is cancer truly “The Emperor of All Maladies”? PLOS ONE, 12(3). doi:10.1371/journal.pone.0173671.

Publications by category

Books (2)

  • Bankhead, P., Janowczyk, A., Reyes-Aldasoro, C.C., Sirinukunwattana, K. and Veta, M. (2019). Preface. ISBN 978-3-030-23936-7.
  • Reyes‐Aldasoro, C.C. (2015). Biomedical Image Analysis Recipes in MATLAB®. Wiley. ISBN 978-1-118-65755-3.

Chapters (6)

  • Arafat, Y. and Reyes-Aldasoro, C.C. (2022). Computational Image Analysis Techniques, Programming Languages and Software Platforms Used in Cancer Research: A Scoping Review. Medical Image Understanding and Analysis (pp. 833–847). Springer International Publishing. ISBN 978-3-031-12052-7.
  • Reyes-Aldasoro, C.C., Barri, M. and Hafezparast, M. (2015). Automatic segmentation of focal adhesions from mouse embryonic fibroblasts. 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) (pp. 548–551). ISBN 978-1-4673-9330-0.
  • Fonseca, J., Reyes-Aldasoro, C., O’Sullivan, C. and Coop, M. (2014). Experimental investigation into the primary fabric of stress transmitting particles. Geomechanics from Micro to Macro (pp. 1019–1024). CRC Press. ISBN 978-1-138-02707-7.
  • Tozer, G.M., Daniel, R., Lunt, S.J., Reyes-Aldasoro, C.C. and Cunningham, V.J. (2014). Haemodynamics and Oxygenation of the Tumour Microcirculation. Advances in Intravital Microscopy (pp. 125–141). Springer Netherlands. ISBN 978-94-017-9360-5.
  • Reyes-Aldasoro, C.C. and Bhalerao, A. Volumetric Texture Analysis in Biomedical Imaging. In Pereira, M. and Freire, M. (Eds.), Biomedical Diagnostics and Clinical Technologies: Applying High-Performance Cluster and Grid Computing IGI-Global. ISBN 978-1-60566-280-0.
  • Reyes-Aldasoro, C.C. and Bhalerao, A. Volumetric Texture Analysis in Biomedical Imaging. Advances in Medical Technologies and Clinical Practice (pp. 200–248). IGI Global.

Conference papers and proceedings (108)

  • Youssef, A. and Reyes Aldasoro, C.C. (2022). Computational Image Analysis Techniques, Programming Languages and Software Platforms Used in Cancer Research: A Scoping Review. Medical Image Understanding and Analysis 27-29 July, Cambridge, UK.
  • Jaffari, R., Hashmani, M.A., Carlos Reyes-Aldasoro, C., Aziz, N. and Hussain Rizvi, S.S. (2021). Deep Learning Object Detection Techniques for Thin Objects in Computer Vision: An Experimental Investigation. 2021 7th International Conference on Control, Automation and Robotics (ICCAR) 23-26 April.
  • Ananda, , Karabag, C., Ter-Sarkisov, A., Alonso, E. and Reyes-Aldasoro, C.C. (2020). Radiography Classification: A Comparison between Eleven Convolutional Neural Networks. 2020 Fourth International Conference on Multimedia Computing, Networking and Applications (MCNA) 19-22 October.
  • Solí­s-Lemus, J.A., Sánchez-Sánchez, B.J., Marcotti, S., Burki, M., Stramer, B. and Reyes-Aldasoro, C.C. (2020). Comparison of Interactions Between Control and Mutant Macrophages.
  • Ngan, K.H., Garcez, A.D., Knapp, K.M., Appelboam, A. and Reyes-Aldasoro, C.C. (2020). A Machine Learning Approach for Colles’ Fracture Treatment Diagnosis.
  • Miller, N., Reyes-Aldasoro, C. and Verhoeven, J. (2019). Asymmetries in tongue-palate contact during speech. International Congress of Phonetic Sciences ICPhS 2019 5-9 August, Melbourne.
  • Verhoeven, J., Mariën, P., De Clerck, I., Daems, L., Reyes-Aldasoro, C. and Miller, N. (2019). Asymmetries in speech articulation as reflected on palatograms: a meta-study. International Congress of Phonetic Sciences ICPhS 2019 5-9 August, Melbourne.
  • Karabag, C., Jones, M.L., Peddie, C.J., Westor, A.E., Collinson, L.M. and Reyes-Aldasoro, C.C. (2019). Segmentation And Modelling of Helanuclear Envelope. 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI) 8-11 April.
  • Bianconi, F., Kather, J.N. and Reyes-Aldasoro, C.C. (2019). Evaluation of Colour Pre-processing on Patch-Based Classification of H&E-Stained Images.
  • (2019). Digital Pathology.
  • Reyes Aldasoro, C.C. (2019). Redesign of the assessment materials for the Module EE3517 Medical Imaging Modalities. The Tenth annual Learning at City Conference 2019: Promoting Student Success London, UK.
  • Ilczyszyn, A., Ringrose, C., Goldsworthy, N., Beresineviciute, L., Reyes Aldasoro, C.C., Appelboam, A. … Knapp, K. (2019). Colles’ Fractures: Intra- and Inter-operator precision of alignment measurements from projection radiographs pre- and post-manipulation under anaesthesia. UK Imaging & Oncology Liverpool UK.
  • Olliverre, N.J., Yang, G., Slabaugh, G.G., Reyes-Aldasoro, C.C. and Alonso, E. (2018). Generating Magnetic Resonance Spectroscopy Imaging Data of Brain Tumours from Linear, Non-Linear and Deep Learning Models. SASHIMI 2018: Simulation and Synthesis in Medical Imaging, LNCS 11037, 130-138 16-22 September, Granada, Spain.
  • Solis-Lemus, J.A., Stramer, B., Slabaugh, G. and Reyes-Aldasoro, C.C. (2018). Shape analysis and tracking of migrating macrophages. 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018) 4-7 April.
  • Leandrou, S., Mamais, I., Petroudi, S., Kyriacou, P.A., Reyes-Aldasoro, C.C. and Pattichis, C.S. (2018). Hippocampal and entorhinal cortex volume changes in Alzheimer's disease patients and mild cognitive impairment subjects. 2018 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) 4-7 March.
  • Solís-Lemus, J.A., Stramer, B., Slabaugh, G. and Reyes-Aldasoro, C.C. (2018). Analysis of the Interactions of Migrating Macrophages.
  • Verhoeven, J., Miller, N.R. and Reyes-Aldasoro, C.C. (2018). Analysis of the Symmetry of Electrodes for Electropalatography with Cone Beam CT Scanning.
  • Karabağ, C., Jones, M.L., Peddie, C.J., Weston, A.E., Collinson, L.M. and Reyes-Aldasoro, C.C. (2018). Automated Segmentation of HeLa Nuclear Envelope from Electron Microscopy Images.
  • Moazzam Jawaid, M., Ramirez-Perez, F., Plumerault, A., Quilichini, F., Alonso Solis-Lemus, J., Martinez-Lemus, L. … Carlos Reyes-Aldasoro, C. (2018). Morphological Analysis of Fenestrae in Arteries.
  • Olliverre, N., Yang, G., Slabaugh, G.G., Reyes-Aldasoro, C.C. and Alonso, E. (2018). Generating Magnetic Resonance Spectroscopy Imaging Data of Brain Tumours from Linear, Non-linear and Deep Learning Models.
  • Reyes-Aldasoro, C. (2017). The proportion of cancer related entries in PubMed has increased considerably. NCRI Cancer Conference 5-8 November, Liverpool, UK.
  • Solís-Lemus, J.A., Stramer, B., Slabaugh, G. and Reyes-Aldasoro, C.C. (2017). Segmentation of Overlapping Macrophages Using Anglegram Analysis.
  • Jawaid, M.M., Rajani, R., Liatsis, P., Reyes-Aldasoro, C.C. and Slabaugh, G. (2017). Improved CTA Coronary Segmentation with a Volume-Specific Intensity Threshold.
  • Green, R.L., Simoes, F.A., Reyes-Aldasoro, C.C., Rossor, A.M., Scoto, M., Barri, M. … Hafezparast, M. (2017). Modulation of cytoplasmic dynein and tubulin modification as potential therapeutic targets in SMA-LED.
  • Cartas Ayala, A., Aghaei, M., Grueter, C., Ratnieks, F. and Reyes-Aldasoro, C.C. (2016). Behavior Analysis of Ants from Video Sequences. International Conference on Pattern Recognition (Visual observation and analysis of Vertebrate And Insect Behavior 2016) 4-8 December, Cancun, Mexico.
  • Leandrou, S., Petroudi, S., Kyriacou, P.A., Reyes-Aldasoro, C.C. and Pattichis, C.S. (2016). An Overview of Quantitative Magnetic Resonance Imaging Analysis Studies in the Assessment of Alzheimer’s Disease.
  • Fonseca, J., Reyes-Aldasoro, C.C. and Wils, L. (2015). Three-dimensional quantification of the morphology and intragranular void ratio of a shelly carbonate sand. 6th International Symposium on Deformation Characteristics of Geomaterials 15-18 November, Buenos Aires.
  • Mian, A. and Reyes-Aldasoro, C. (2015). Quantification of the Effects of Low Dose Radiation and its Impact on Cardiovascular Risks. Medical Image Understanding and Analysis 15-17 July, Lincoln, UK.
  • Hoffmann, E. and Reyes-Aldasoro, C. (2015). Automatic segmentation of centromeres, foci and delineation of chromosomes. Medical Image Understanding and Analysis 15-17 July, Lincoln, UK.
  • Huang, Y., Reyes Aldasoro, C.C., Persoone, G. and Wlodkowic, D. (2015). Integrated microfluidic technology for sub-lethal and behavioral marine ecotoxicity biotests. SPIE Microtechnologies.
  • Bender, S., Castorena-Gonzalez, J., Garro, M., Reyes-Aldasoro, C., Sowers, J., DeMarco, V. … Martinez-Lemus, L. (2015). Regional Variation in Arterial Stiffening and Dysfunction in Western Diet-Induced Obesity.
  • Solis-Lemus, J.A., Huang, Y., Wlodkowic, D. and Reyes-Aldasoro, C.C. (2015). Microfluidic environment and tracking analysis for the observation of Artemia Franciscana. Machine Vision of Animals and their Behaviour Workshop 2015.
  • Blazakis, K., Reyes-Aldasoro, C., Styles, V., Venkataraman, C. and Madzvamuse, A. (2014). An optimal control approach to cell tracking. Inverse Problems, from Theory to Application 26-28 August, Bristol, UK.
  • Bowyer, S., Kanthou, C. and Reyes-Aldasoro, C. (2014). Analysis of capillary-like structures formed by endothelial cells in a novel organotypic assay developed from heart tissue. Medical Image Understanding and Analysis 9-11 July, London.
  • (2014). Medical Image Understanding and Analysis 2014. Medical Image Understanding and Analysis 9-11 July, London UK.
  • Doulgerakis, M., Argyriou, V., Tzimiropoulos, G. and Pierscionek, B.K. (2014). Non-Intrusive Action Symmetry Measurement for Dementia and Rehabilitation.
  • Unger, J., Schuster, M., Hecker, D.J., Schick, B. and Lohscheller, J. (2014). A Wavelet-based Approach for Analyzing Non-Stationary Phonation Sequences from Endoscopic High-Speed Videos.
  • Flight, R., Landini, G., Styles, I.B., Shelton, R., Milward, M. and Cooper, P. (2014). Semi-Automated Cell Counting in Phase Contrast Images of Epithelial Monolayers.
  • Udomchaiporn, A., Coenen, F., Sluming, V. and García-Fiñana, M. (2014). 3-D MRI Brain Scan Classification of Epilepsy versus Non-Epilepsy.
  • Hernández, M.D.C.V., Kim, J.-.I., Whiteford, I., Qiu, X., Wardlaw, J.M. and Park, J. (2014). Automatic Hippocampal Multimodal Assessment for Studies of Stroke and Small Vessel Disease.
  • Zhang, J., McKenna, S.J., Zhang, J., Coats, M. and Carey, F.A. (2014). Analysing the Surface Morphology of Colorectal Polyps: Differential Geometry and Pit Pattern Prediction.
  • Khazendar, S., Farren, J., Al-Assam, H., Du, H., Sayasneh, A., Bourne, T. … Jassim, S. (2014). Automatic Identification of Early Miscarriage Based on Multiple Features Extracted From Ultrasound Images.
  • Fordyce, N., McKenna, S.J., Hacker, C. and Lucocq, J. (2014). Finding Golgi Stacks in Electron Micrographs.
  • Fiorini, S., Ballerini, L., Trucco, E. and Ruggeri, A. (2014). Automatic Generation of Synthetic Retinal Fundus Images.
  • Yu, T.Y., Dehghani, H., Brain, K.L., Syeda, F., Holmes, A., Kirchhof, P. … Fabritz, L. (2014). New Optical Mapping Design and Automated Algorithms for Cardiac Electrophysiology.
  • Körner, M., Krishna, M.V., Süße, H., Ortmann, W. and Denzler, J. (2014). Regularized Geometric Hulls for Nucleus Segmentation from Microscopy Images.
  • Emrith, K., Slabaugh, G.G., Poullis, A., Groves, C. and Smith, M.L. (2014). Photometric Stereo Reconstruction for Surface Analysis of Mucosal Tissue.
  • Huang, T., Hacker, C., Lucocq, J. and McKenna, S.J. (2014). Detecting and Segmenting Nanodiscs in Immuno-Electron Micrographs.
  • Cury, C., Glaunès, J.A., Chupin, M. and Colliot, O. (2014). Fast Template-based Shape Analysis Using Diffeomorphic Iterative Centroid.
  • Constantinou, I., Pattichis, M.S., Tziakouri, C., Pattichis, C.S. and Petroudi, S. (2014). Multiscale AM-FM Models and Instantaneous Amplitude Evaluation for Mammographic Density Classification.
  • Al-Baddai, S., Al-Subari, K., Tomé, A.M., Volberg, G. and Lang, E.W. (2014). Combining EMD with ICA to Analyze Combined EEG-fMRI Data.
  • Ahmad, J., Sun, J., Smith, L.N. and Smith, M.L. (2014). Non-Contact Pulmonary Functional Testing Through an Improved Photometric Stereo Approach.
  • Zhang, L., Fisher, M. and Wang, W. (2014). Retinal Vessel Segmentation using Gabor Filter and Textons.
  • Sahrim, M., Nixon, M.S. and Carare, R. (2014). On Bloodvessel Branching Analysis for the Detection of Alzheimer's Disease.
  • Khadidos, A., Sanchez, V. and Li, C.-.T. (2014). Active Contours with Weighted External Forces for Medical Image Segmentation.
  • Nketia, T.A., Rittscher, J. and Noble, J.A. (2014). Utilizing Phase Retardation Features for Segmenting Cells in Phase Contrast Microscopy Images.
  • Jaccard, N., Szita, N. and Griffin, L.D. (2014). Trainable Segmentation of Phase Contrast Microscopy Images Based on Local Basic Image Features Histograms.
  • Correa, J., Auer, M. and Skinner, D. (2014). Integrated Tools for Next Generation Bioimaging.
  • Okuboyejo, D., Olugbara, O.O. and Odunaike, S. (2014). Unsupervised Restoration of Hair-Occluded Lesion in Dermoscopic Images.
  • Vasconcelos, M.J.M. and Rosado, L. (2014). Automatic Reflection Detection on Dermatological Images Acquired via Mobile Devices.
  • Kolár, R. and Podlipna, P. (2014). Analysis of Images from Optical Coherence Tomography for the Nanoparticle Transport.
  • Ferrarese, F.P. and Larsson, J. (2014). Challenges in Functional Imaging of the Visual Cortex: Data-driven Model-agnostic Estimation of Population Receptive Fields.
  • Cheng, D.-.C. and Liu, S.-.H. (2014). Automated Vessel Boundary Detection Using 3D Expansion of Dynamic Programming.
  • Bowyer, S., Kanthou, C. and Reyes-Aldasoro, C.C. (2014). Analysis of Capillary-like Structures Formed by Endothelial Cells in a Novel Organotypic Assay Developed from Heart Tissue.
  • (2014). Medical Image Understanding and Analysis - MIUA 2014. 18th Annual Conference, Egham, UK, July 9-11, 2014. Proceedings.
  • Bakas, S., Chatzimichail, K., Labbé, B., Hunter, G., Sidhu, P.S. and Makris, D. (2014). Fast Segmentation of Focal Liver Lesions in Contrast-Enhanced Ultrasound Data.
  • He, W., Kibiro, M., Juette, A., Hogg, P., Denton, E.R.E. and Zwiggelaar, R. (2014). A Novel Breast Image Preprocessing For Full Field Digital Mammographic Segmentation and Risk Classification.
  • Janssens, T., Vanhees, I., Gunst, J., Owen, H., Berghe, G.V.D. and Grandas, F.G. (2014). Automated Histological Quantification of Trabecular Bone Tissue in Critical Illness.
  • Okashi, O.A., Du, H., Selway, J.L., Lelliott, C., Maguire, S., Melvin, D. … Al-Assam, H. (2014). Automatic Ribs Segmentation and Counting From Mouse X-ray Images.
  • Schenk, F., Urschler, M., Aigner, C., Roesner, I., Aichinger, P. and Bischof, H. (2014). Automatic Glottis Segmentation from Laryngeal High-Speed Videos Using 3D Active Contours.
  • Soltaninejad, M., Ye, X., Yang, G., Allinson, N.M. and Lambrou, T. (2014). Brain Tumour Grading in Different MRI Protocols using SVM on Statistical Features.
  • Soltaninejad, M., Lambrou, T., Qureshi, A., Allinson, N.M. and Ye, X. (2014). A Hybrid Method for Haemorrhage Segmentation in Trauma Brain CT.
  • Phillips, M., Barrington, S., Hill, D.L.G. and Marsden, P. (2014). Comparison of Threshold-Based Segmentation Methods on Pre- and Post-Therapy PET Scans.
  • Nelson, C.J., Dixon, M., Laissue, P. and Obara, B. (2014). Speeding Up Active Mesh Segmentation by Local Termination of Nodes.
  • Meah, C., Marshall, R., Claridge, E., Bongs, K. and Styles, I.B. (2014). A Simulation Toolbox For Biomedical Plenoptic Imaging.
  • Margeta, J., Criminisi, A., Lee, D.C. and Ayache, N. (2014). Recognizing Cardiac Magnetic Resonance Acquisition Planes.
  • Soukup, J., Lasan, M. and Sroubek, F. (2014). Segmentation of Individual Cells in Phase Contrast Microscopy Images.
  • Purwani, S., Cootes, T.F. and Twining, C.J. (2014). Ensemble Registration: Combining Groupwise Registration and Segmentation.
  • Namburete, A.I.L., Stebbing, R.V. and Noble, J.A. (2014). Diagnostic Plane Extraction from 3D Parametric Surface of the Fetal Cranium.
  • Pansiot, J., Revéret, L. and Boyer, E. (2014). Combined Visible and X-Ray 3D Imaging.
  • Qureshi, A. and Schetinin, V. (2014). Computer-Aided Segmentation and Estimation of Indices in Brain CT Scans.
  • Kanthou, C., Dachs, G., Lefley, D., Reyes-Aldasoro, C. and English, W. (2013). Endogenous VEGF isoform expression regulates tumour cell motility. 2013 NCRI Cancer Conference 3-6 November, Liverpool.
  • Griffiths, M.K., Reyes-Aldasoro, C. and Rodenberg, J.M. (2012). A Framework for Providing Research Applications as a Service Using the IOME Toolkit. Digital Research 2012 10-12 September, Oxford, UK.
  • Henry, K., Reyes-Aldasoro, C.C. and Renshaw, S.A. (2012). Exploring neutrophil behaviour in a zebrafish model of inflammation through the generation of novel parameters using MatLab algorithms. European Conference in Immunology 5-8 September, Glasgow UK.
  • Reyes-Aldasoro, C.C., Henry, K. and Renshaw, S.A. (2012). Tracking neutrophils in zebrafish: the use of synthetic data sets. Medical Image Understanding and Analysis 9-11 July, Swansea UK.
  • Kanthou, C., Ghareai, Z., Haagen, J., Lunt, S.J., Reyes-Aldasoro, C., Doeer, W. … Tozer, G.M. (2012). Inhibition of angiogenesis in the mouse heart by ionizing radiation. ACR 103rd Annual Meeting 31 Mar 2012 – 4 Apr 2012, Chicago IL.
  • Bhalerao, A., Pase, L., Lieschke, G.J., Renshaw, S.A. and Reyes-Aldasoro, C.C. (2012). Local affine texture tracking for serial registration of zebrafish images.
  • Reyes-Aldasoro, C.C., Bjorndahl, M., Akerman, S., Ibrahim, J. and Tozer, G.M. (2011). An on-line chromatic and scale-space microvasculature-tracing analysis for transmitted light optical images. Medical Image Understanding and Analysis 14-15 July, London UK.
  • Reyes-Aldasoro, C., Bjorndahl, M., Akerman, S., Ibrahim, J. and Tozer, G.M. (2011). An on-line chromatic and scale-space microvasculature-tracing analysis for transmitted light optical images. Medical Image Understanding and Analysis 14-15 July, London, Uk.
  • Reyes-Aldasoro, C.C., Bjorndahl, M., Ibrahim, J., Akerman, S. and Tozer, G.M. (2010). A scale-space tracing algorithm for analysis of tumour blood vessel morphology from transmitted light optical images. 2010 NCRI Cancer Conference 31 Oct 2010 – 3 Nov 2010, Liverpool.
  • Kanthou, C., Reyes-Aldasoro, C.C. and Tozer, G.M. (2010). Signaling interactions between RhoGTPase and cAMP/cGMP influence endothelial responses to the vascular disrupting agent combretastatin A4 phosphate. 2010 NCRI Cancer Conference 31 Oct 2010 – 3 Nov 2010, Liverpool.
  • Williams, L., Fisher, M., Reyes-Aldasoro, C.C., Kanthou, C. and Tozer, G.M. (2010). A critical role for RhoA-GTPase signaling in the tumour vascular disrupting action of combretastatin A4-phosphate in vivo. 2010 NCRI Cancer Conference 31 Oct 2010 – 3 Nov 2010, Liverpool.
  • Reyes-Aldasoro, C., Williams, L.J., Akerman, S., Kanthou, C. and Tozer, G.M. (2010). Segmentation and morphological analysis of microvessels in immunostained histological tumour sections. Medical Image Understanding and Analysis 6-7 July, Warwick, Uk.
  • Griffiths, M.K., Reyes-Aldasoro, C., Savas, D. and Greenfield, T. (2009). IOME, A Toolkit for Distributed and Collaborative Computational Science and Engineering. UK e-science All Hands Meeting 7-9 December, Oxford, UK.
  • Reyes-Aldasoro, C., Zhao, Y., Coca, D., Billings, S.A., Kadirkamanathan, V., Tozer, G.M. … Renshaw, S.A. (2009). Analysis of immune cell function using in vivo cell shape analysis and tracking. Pattern Recognition in Bioinformatics 7-9 September, Sheffield, UK.
  • Akerman, S., Reyes-Aldasoro, C., Fisher, M., Pettyjohn, K.L., Bjorndahl, M., Evans, H. … Tozer, G.M. (2009). Microflow of fluorescently labelled red blood cells in tumours expressing single isoforms of VEGF and their response to VEGF-R tyrosine kinase inhibition. Micro and Nano Fluids 1-2 September, London, Uk.
  • Williams, L., Reyes Aldasoro, C.C., Kanthou, C. and Tozer, G. (2008). THE CONTRIBUTION OF THE RHO PROTEIN PATHWAY TO THE TUMOUR VASCULAR DISRUPTING ACTION OF CA-4-P. 58th Meeting of the British Microcirculation Society 1-2 April, London, UK.
  • Reyes-Aldasoro, C.C., Akerman, S. and Tozer, G.M. (2007). Measuring red blood cell velocity with a keyhole tracking algorithm.
  • Reyes Aldasoro, C.C., Akerman, S. and Tozer, G. (2007). RED BLOOD CELL TRACKING AND VELOCITY MEASUREMENT WITH A KEYHOLE MODEL OF MOVEMENT. British Microcirculation Society Annual Scientific Meeting and Symposium Belfast, UK.
  • Reyes Aldasoro, C.C., Akerman, S. and Tozer, G. (2006). Measurement of Fluorescently Labelled Red Blood Cell Velocity Using Self-Organising Maps. 56th Meeting of the British Microcirculation Society Dundee, UK.
  • Reyes Aldasoro, C.C., Wilson, I., Ameer-Beg, S., Vojnovic, B. and Tozer, G. (2005). Analysis of the effects of tumour vascular targeting drugs on the vascular permeability of experimental tumours through multiphoton microscopy. Microcirculation 2005: A Transatlantic Microcirculation Conference Durham, New Hampshire, USA.
  • Reyes Aldasoro, C.C., Wilson, I., Prise, V., Barber, P., Ameer-Beg, S., Vojnovic, B. … Tozer, G. (2005). Measurement of Vascular Permeability from Multiphoton Microscopy of Experimental Tumours. NCRI Cancer Conference Birmingham UK.
  • Bhalerao, A. and Reyes-Aldasoro, C.C. (2003). Volumetric Texture Description and Discriminant Feature Selection for MRI.
  • Reyes Aldasoro, C.C. and Bhalerao, A. (2003). Volumetric Texture Description and Discriminant Feature Selection for MRI. Information Processing in Medical Imaging Ambleside UK.
  • Reyes Aldasoro, C.C. and Aldeco, A.L. (2000). Image Segmentation and Compression using Neural Networks. Advances in Artificial Perception and Robotics CIMAT Guanajuato, Mexici.
  • Reyes-Aldasoro, C.C. and Kuhlmann, F. (1999). Telecommunications and Internet in the Future Society: Myths and Realities.
  • Reyes-Aldasoro, C.C., Akerman, S. and Tozer, G.M. Measuring Red Blood Cell Velocity with a Keyhole Tracking Algorithm.
  • Reece, J., Couvillon, M., Grüter, C., Ratnieks, F. and Reyes-Aldasoro, C.C. Automatic Analysis of Bees’ Waggle Dance.

Dataset

Journal articles (83)

Software (2)

  • Reyes-Aldasoro, C. PhagoSight: an open-source MATLAB package for the analysis of neutrophils and macrophage migration..
  • Reyes-Aldasoro, C., Griffiths, M.K., Savas, D. and Tozer, G.M. www.caiman.org.uk..

Theses/dissertations (2)

Professional activities

Editorial activity (11)

  1. Reviewer for Pattern Recognition.
  2. Reviewer for Pattern Recognition Letters.
  3. Reviewer for IEEE Transactions on Medical Imaging.
  4. Reviewer for IEEE Transactions on Image Processing.
  5. Reviewer for IEEE Transactions on Neural Networks.
  6. Reviewer for IEEE Transactions on Systems, Man, and Cybernetics.
  7. Reviewer for Computational and Mathematical Methods in Medicine.
  8. Reviewer for American Journal of Pathology.
  9. Reviewer for Annals of the BMVA.
  10. Assistant Editor for Oncology News.
  11. Academic Editor PLOS ONE.

Events/conferences (3)

  1. European Congress on Digital Pathology. (Conference) (2019). Organising Committee.
  2. Medical Image Understanding and Analysis. Royal Holloway University of London (2014).
    Description: Chair
  3. Angiogenesis Network Conference. Sheffield University (2007).
    Description: Co-chair

Other (3)

  1. Webmaster for http://www.caiman.org.uk.
  2. Webmaster for http://www.phagosight.org.
  3. IET’s Vision & Imaging Technical Network Executive Committee Member.