Dr Constantino Carlos Reyes Aldasoro • City, University of London

Contact details

Address

Dr Constantino Carlos Reyes Aldasoro A401B , College Building [A]
City, University of London
Northampton Square
London EC1V 0HB
United Kingdom

About
Research
Publications
Professional activities

About

Overview

I am a Senior Lecturer at the School of Mathematics, Computer Science and Engineering at City, University of London. I work in the Department of Computer Science and I am affiliated to the giCentre.

My overall objective is to shed some light into the causes and processes of human illnesses especially Cancer, and the infection or inflammation processes related to these diseases. To do this, I apply a variety of techniques, from traditional image processing, to visualisation to artificial intelligence to extract meaningful information from biological and medical experimentation and data sets. By analysing images, videos or data sets (for instance the PubMed database), I hope to contribute in finding ways to cure and prevent diseases or improve the way these are treated.

Personal Website

http://www.staff.city.ac.uk/~sbbk034/

Linked-In

https://www.linkedin.com/in/constantino-carlos-reyes-aldasoro-090b822b/

Twitter

https://twitter.com/C_ReyesAldasoro

GitHub

https://github.com/reyesaldasoro

Qualifications

PGCert HE, University of Sussex, United Kingdom, 2012
PhD, University of Warwick, United Kingdom, Jan 2001 – Feb 2005
MSc, Imperial College London, United Kingdom, Oct 1993 – Sep 1994
BSc, Universidad Nacional Autonoma de Mexico, Mexico, Nov 1987 – Aug 1993

Employment

Executive Committee Member: Vision and Imaging Network, Institution of Engineering and Technology, Feb 2019 – present
Senior Lecturer in Biomedical Image Analysis, City, University of London, Sep 2015 – present
Executive Committee Member, British Association for Cancer Research, Nov 2013 – Nov 2016
Lecturer in Biomedical Image Analysis, City University London, Jul 2013 – Sep 2015
Lecturer in Biomedical Engineering, University of Sussex, May 2011 – Jun 2013
Research Fellow, University of Sheffield, Jan 2009 – Apr 2013
Postdoctoral Research Associate, University of Sheffield, Feb 2005 – Dec 2008
Graduate Teaching Assistant, University of Warwick, 2001 – 2004
Associate Professor, Instituto Tecnológico Autónomo de México, 1998 – 2000
Visiting Researcher, Massachusetts Institute of Technology, 1997
Assistant Professor, Instituto Tecnológico y de Estudios Superiores de Monterrey, 1996 – 1997

Fellowships

Higher Education Academy, Nov 2012 – present

Memberships of professional organisations

Senior Member, Institute of Electrical and Electronic Engineers (IEEE), Nov 2011 – present
Member of the Executive Committee, British Association for Cancer Research (BACR), Apr 2005 – present
Member, British Machine Vision Association (BMVA)
Secretary of the Steering Committee, Medical Image Understanding & Analysis (MIUA)

Languages

English (can read, write, speak, understand spoken and peer review), French (can read, write, speak and understand spoken), Italian (can read, speak and understand spoken) and Spanish; Castilian (can read, write, speak, understand spoken and peer review).

Research

Research Interests

My area of research is Image Analysis of Biomedical Images. This research covers three particular areas:

* the acquisition (I have worked with light and fluorescent microscopes as well as access to confocal and multiphoton microscopes) of biomedical images,
* the analysis of these images or videos through algorithms, mathematical models and statistical methodologies, which provide quantitative measurements, and
* the interpretation of the data (2D images, 3D volumes, 2D+t videos, 3D+t volumetric time lapse data sets).

This final stage is crucial, what conclusions can we draw from the images? Can we reveal something of the underlying biological processes of cells or tumours? What are the effects of drugs or treatments? By using image analysis we are able to extract a wealth of information that is present in the images we capture, and that it is not possible to obtain by simple qualitative analysis.

My overall objective is to shed some light into the causes and processes of human illnesses especially cancer, and the infection or inflammation processes related to this diseas. By analysing the images and videos from many experiments I hope to and contribute in finding ways to cure and prevent them.

I have analysed different biological processes - cell migration, vascular permeability, red cell velocity, inflammation - and this research has lead to more than 25 journal papers.

I have developed Image Analysis algorithms and software for the following experiments:

- Tracking of fluorescently labelled Red Blood Cells.
- Quantification of vascular permeability to FITC-Dextran in tumours.
- Measurement of cell migration in vitro.
- Geometrical analysis of vessels from immunohistochemistry images stained for CD-31.
- Topological analysis of tumour vasculature in light microscopy images.
- Measurement of fluorescence intensity for vessel and perfusion quantification.

Research Website

My personal website contains more details of my research, software and teaching interests:

http://staff.city.ac.uk/~sbbk034/

Research students

Ananda

Attendance: Oct 2018 – Sep 2021, full-time

Thesis title: Analysis of Wrist Fractures from X-Ray images

Role: 1st Supervisor

Cefa Karabag

Attendance: Oct 2017 – present, part-time

Thesis title: Analysis of HeLa Cells observed with 3D Electron Microscopy

Role: 1st Supervisor

Jose Alonso Solis-Lemus

Attendance: Jan 2015 – Dec 2018, full-time

Thesis title: Segmentation and Shape Tracking of Overlapping Macrophages in Fluorescent Microscopy Images

Role: 1st Supervisor

Nathan Olliverre

Thesis title: Using Computer Vision and Machine Learning for the Advancement in Classification of Brain Tumours from Magnetic Resonance Spectroscopy Imaging.

Role: 2nd Supervisor

Muhammad Moazzam Jawaid

Thesis title: Detection, Localization and Quantification of Non-Calcified Coronary Plaques in Contrast Enhanced CTA

Role: 2nd Supervisor

Stefanos Leandrou

Thesis title: Quantitative Texture analysis on MRI imaging in the assessment of Alzheimer’s Disease

Role: 2nd Supervisor

Mauricio Ortega

Thesis title: Analysis of Histopathology Images

Role: 1st Supervisor

Konstantinos Blazakis

Thesis title: Computational methods for investigating cell motility with applications to neutrophil cell migration

Further information: PhD University of Sussex

Tengfei Yin

Thesis title: A Robust and Artifact Resistant Algorithm of Ultrawideband Imaging System for Breast Cancer Detection

Further information: PhD awarded 2015 University of Sussex

Publications

Featured publications

Kather, J.N., Krisam, J., Charoentong, P., Luedde, T., Herpel, E., Weis, C.-.A. … Halama, N. (2019). Predicting survival from colorectal cancer histology slides using deep learning: A retrospective multicenter study. PLOS Medicine, 16(1), pp. 1–1. doi:10.1371/journal.pmed.1002730.
Reyes-Aldasoro, C.C. (2017). The proportion of cancer-related entries in PubMed has increased considerably; is cancer truly “The Emperor of All Maladies”? PLOS ONE, 12(3). doi:10.1371/journal.pone.0173671.
[publisher’s website]

Publications by category

Books (2)

Bankhead, P., Janowczyk, A., Reyes-Aldasoro, C.C., Sirinukunwattana, K. and Veta, M. (2019). Preface. ISBN 978-3-030-23936-7.
Reyes‐Aldasoro, C.C. (2015). Biomedical Image Analysis Recipes in MATLAB®. Wiley. ISBN 978-1-118-65755-3.

Chapters (15)

Arafat, Y. and Reyes-Aldasoro, C.C. (2022). Computational Image Analysis Techniques, Programming Languages and Software Platforms Used in Cancer Research: A Scoping Review. Medical Image Understanding and Analysis (pp. 833–847). Springer International Publishing. ISBN 978-3-031-12052-7.
Reyes-Aldasoro, C.C. (2015). Western Blots. BIOMEDICAL IMAGE ANALYSIS RECIPES IN MATLAB(R): FOR LIFE SCIENTISTS AND ENGINEERS (pp. 79–133). ISBN 978-1-118-65755-3.
Reyes-Aldasoro, C.C. (2015). The Basic Ingredients. BIOMEDICAL IMAGE ANALYSIS RECIPES IN MATLAB(R): FOR LIFE SCIENTISTS AND ENGINEERS (pp. 1–44). ISBN 978-1-118-65755-3.
Reyes-Aldasoro, C.C. (2015). Scratch Wound Assays. BIOMEDICAL IMAGE ANALYSIS RECIPES IN MATLAB(R): FOR LIFE SCIENTISTS AND ENGINEERS (pp. 135–213). ISBN 978-1-118-65755-3.
Reyes-Aldasoro, C.C. (2015). Introduction to Images. BIOMEDICAL IMAGE ANALYSIS RECIPES IN MATLAB(R): FOR LIFE SCIENTISTS AND ENGINEERS (pp. 45–70). ISBN 978-1-118-65755-3.
Reyes-Aldasoro, C.C. (2015). Introduction to Colour. BIOMEDICAL IMAGE ANALYSIS RECIPES IN MATLAB(R): FOR LIFE SCIENTISTS AND ENGINEERS (pp. 71–78). ISBN 978-1-118-65755-3.
Reyes-Aldasoro, C.C., Barri, M. and Hafezparast, M. (2015). Automatic segmentation of focal adhesions from mouse embryonic fibroblasts. 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) (pp. 548–551). ISBN 978-1-4673-9330-0.
Reyes-Aldasoro, C.C. (2015). Fluorescence Microscopy. BIOMEDICAL IMAGE ANALYSIS RECIPES IN MATLAB(R): FOR LIFE SCIENTISTS AND ENGINEERS (pp. 291–341). ISBN 978-1-118-65755-3.
Reyes-Aldasoro, C.C. (2015). Creating Publication-Quality Figures from Matlab. BIOMEDICAL IMAGE ANALYSIS RECIPES IN MATLAB(R): FOR LIFE SCIENTISTS AND ENGINEERS (pp. 343–399). ISBN 978-1-118-65755-3.
Reyes-Aldasoro, C.C. (2015). Bright Field Microscopy. BIOMEDICAL IMAGE ANALYSIS RECIPES IN MATLAB(R): FOR LIFE SCIENTISTS AND ENGINEERS (pp. 215–289). ISBN 978-1-118-65755-3.
Reyes-Aldasoro, C.C. (2015). Biomedical Image Analysis Recipes in MATLAB (R) For Life Scientists and Engineers Preface. BIOMEDICAL IMAGE ANALYSIS RECIPES IN MATLAB(R): FOR LIFE SCIENTISTS AND ENGINEERS (pp. VII–VIII). ISBN 978-1-118-65755-3.
Fonseca, J., Reyes-Aldasoro, C., O’Sullivan, C. and Coop, M. (2014). Experimental investigation into the primary fabric of stress transmitting particles. Geomechanics from Micro to Macro (pp. 1019–1024). CRC Press. ISBN 978-1-138-02707-7.
Tozer, G.M., Daniel, R., Lunt, S.J., Reyes-Aldasoro, C.C. and Cunningham, V.J. (2014). Haemodynamics and Oxygenation of the Tumour Microcirculation. Advances in Intravital Microscopy (pp. 125–141). Springer Netherlands. ISBN 978-94-017-9360-5.
Reyes-Aldasoro, C.C. and Bhalerao, A. Volumetric Texture Analysis in Biomedical Imaging. In Pereira, M. and Freire, M. (Eds.), Biomedical Diagnostics and Clinical Technologies: Applying High-Performance Cluster and Grid Computing IGI-Global. ISBN 978-1-60566-280-0.
Reyes-Aldasoro, C.C. and Bhalerao, A. Volumetric Texture Analysis in Biomedical Imaging. Advances in Medical Technologies and Clinical Practice (pp. 200–248). IGI Global.

Conference papers and proceedings (108)

Youssef, A. and Reyes Aldasoro, C.C. (2022). Computational Image Analysis Techniques, Programming Languages and Software Platforms Used in Cancer Research: A Scoping Review. Medical Image Understanding and Analysis 27-29 July, Cambridge, UK.
Jaffari, R., Hashmani, M.A., Carlos Reyes-Aldasoro, C., Aziz, N. and Hussain Rizvi, S.S. (2021). Deep Learning Object Detection Techniques for Thin Objects in Computer Vision: An Experimental Investigation. 2021 7th International Conference on Control, Automation and Robotics (ICCAR) 23-26 April. doi:10.1109/iccar52225.2021.9463487
Ananda, , Karabag, C., Ter-Sarkisov, A., Alonso, E. and Reyes-Aldasoro, C.C. (2020). Radiography Classification: A Comparison between Eleven Convolutional Neural Networks. 2020 Fourth International Conference on Multimedia Computing, Networking and Applications (MCNA) 19-22 October. doi:10.1109/mcna50957.2020.9264285
Solís-Lemus, J.A., Sánchez-Sánchez, B.J., Marcotti, S., Burki, M., Stramer, B. and Reyes-Aldasoro, C.C. (2020). Comparison of Interactions Between Control and Mutant Macrophages. doi:10.1007/978-3-030-39343-4_40
Ngan, K.H., Garcez, A.D., Knapp, K.M., Appelboam, A. and Reyes-Aldasoro, C.C. (2020). A Machine Learning Approach for Colles’ Fracture Treatment Diagnosis. doi:10.1007/978-3-030-52791-4_25
Reece, J., Couvillon, M., Grüter, C., Ratnieks, F. and Reyes-Aldasoro, C.C. (2020). Automatic Analysis of Bees’ Waggle Dance. doi:10.1101/2020.11.21.354019
Miller, N., Reyes-Aldasoro, C. and Verhoeven, J. (2019). Asymmetries in tongue-palate contact during speech. International Congress of Phonetic Sciences ICPhS 2019 5-9 August, Melbourne.
Verhoeven, J., Mariën, P., De Clerck, I., Daems, L., Reyes-Aldasoro, C. and Miller, N. (2019). Asymmetries in speech articulation as reflected on palatograms: a meta-study. International Congress of Phonetic Sciences ICPhS 2019 5-9 August, Melbourne.
Karabag, C., Jones, M.L., Peddie, C.J., Westor, A.E., Collinson, L.M. and Reyes-Aldasoro, C.C. (2019). Segmentation And Modelling of Helanuclear Envelope. 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI) 8-11 April. doi:10.1109/isbi.2019.8759151
Bianconi, F., Kather, J.N. and Reyes-Aldasoro, C.C. (2019). Evaluation of Colour Pre-processing on Patch-Based Classification of H&E-Stained Images. doi:10.1007/978-3-030-23937-4_7
(2019). Digital Pathology. doi:10.1007/978-3-030-23937-4
Reyes Aldasoro, C.C. (2019). Redesign of the assessment materials for the Module EE3517 Medical Imaging Modalities. The Tenth annual Learning at City Conference 2019: Promoting Student Success London, UK.
Ilczyszyn, A., Ringrose, C., Goldsworthy, N., Beresineviciute, L., Reyes Aldasoro, C.C., Appelboam, A. … Knapp, K. (2019). Colles’ Fractures: Intra- and Inter-operator precision of alignment measurements from projection radiographs pre- and post-manipulation under anaesthesia. UK Imaging & Oncology Liverpool UK.
Olliverre, N.J., Yang, G., Slabaugh, G.G., Reyes-Aldasoro, C.C. and Alonso, E. (2018). Generating Magnetic Resonance Spectroscopy Imaging Data of Brain Tumours from Linear, Non-Linear and Deep Learning Models. SASHIMI 2018: Simulation and Synthesis in Medical Imaging, LNCS 11037, 130-138 16-22 September, Granada, Spain. doi:10.1007/978-3-030-00536-8_14
Solis-Lemus, J.A., Stramer, B., Slabaugh, G. and Reyes-Aldasoro, C.C. (2018). Shape analysis and tracking of migrating macrophages. 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018) 4-7 April. doi:10.1109/isbi.2018.8363741
Leandrou, S., Mamais, I., Petroudi, S., Kyriacou, P.A., Reyes-Aldasoro, C.C. and Pattichis, C.S. (2018). Hippocampal and entorhinal cortex volume changes in Alzheimer's disease patients and mild cognitive impairment subjects. 2018 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) 4-7 March. doi:10.1109/bhi.2018.8333412
Solís-Lemus, J.A., Stramer, B., Slabaugh, G. and Reyes-Aldasoro, C.C. (2018). Analysis of the Interactions of Migrating Macrophages. doi:10.1007/978-3-319-95921-4_25
Verhoeven, J., Miller, N.R. and Reyes-Aldasoro, C.C. (2018). Analysis of the Symmetry of Electrodes for Electropalatography with Cone Beam CT Scanning. doi:10.1007/978-3-319-95921-4_14
Karabağ, C., Jones, M.L., Peddie, C.J., Weston, A.E., Collinson, L.M. and Reyes-Aldasoro, C.C. (2018). Automated Segmentation of HeLa Nuclear Envelope from Electron Microscopy Images. doi:10.1007/978-3-319-95921-4_23
Moazzam Jawaid, M., Ramirez-Perez, F., Plumerault, A., Quilichini, F., Alonso Solis-Lemus, J., Martinez-Lemus, L. … Carlos Reyes-Aldasoro, C. (2018). Morphological Analysis of Fenestrae in Arteries. doi:10.1007/978-3-319-95450-9_23
Olliverre, N., Yang, G., Slabaugh, G.G., Reyes-Aldasoro, C.C. and Alonso, E. (2018). Generating Magnetic Resonance Spectroscopy Imaging Data of Brain Tumours from Linear, Non-linear and Deep Learning Models.
Reyes-Aldasoro, C. (2017). The proportion of cancer related entries in PubMed has increased considerably. NCRI Cancer Conference 5-8 November, Liverpool, UK.
Solís-Lemus, J.A., Stramer, B., Slabaugh, G. and Reyes-Aldasoro, C.C. (2017). Segmentation of Overlapping Macrophages Using Anglegram Analysis. doi:10.1007/978-3-319-60964-5_69
Jawaid, M.M., Rajani, R., Liatsis, P., Reyes-Aldasoro, C.C. and Slabaugh, G. (2017). Improved CTA Coronary Segmentation with a Volume-Specific Intensity Threshold. doi:10.1007/978-3-319-60964-5_18
Green, R.L., Simoes, F.A., Reyes-Aldasoro, C.C., Rossor, A.M., Scoto, M., Barri, M. … Hafezparast, M. (2017). Modulation of cytoplasmic dynein and tubulin modification as potential therapeutic targets in SMA-LED.
Cartas Ayala, A., Aghaei, M., Grueter, C., Ratnieks, F. and Reyes-Aldasoro, C.C. (2016). Behavior Analysis of Ants from Video Sequences. International Conference on Pattern Recognition (Visual observation and analysis of Vertebrate And Insect Behavior 2016) 4-8 December, Cancun, Mexico.
Leandrou, S., Petroudi, S., Kyriacou, P.A., Reyes-Aldasoro, C.C. and Pattichis, C.S. (2016). An Overview of Quantitative Magnetic Resonance Imaging Analysis Studies in the Assessment of Alzheimer’s Disease. doi:10.1007/978-3-319-32703-7_56
Fonseca, J., Reyes-Aldasoro, C.C. and Wils, L. (2015). Three-dimensional quantification of the morphology and intragranular void ratio of a shelly carbonate sand. 6th International Symposium on Deformation Characteristics of Geomaterials 15-18 November, Buenos Aires.
Mian, A. and Reyes-Aldasoro, C. (2015). Quantification of the Effects of Low Dose Radiation and its Impact on Cardiovascular Risks. Medical Image Understanding and Analysis 15-17 July, Lincoln, UK.
Hoffmann, E. and Reyes-Aldasoro, C. (2015). Automatic segmentation of centromeres, foci and delineation of chromosomes. Medical Image Understanding and Analysis 15-17 July, Lincoln, UK.
Huang, Y., Reyes Aldasoro, C.C., Persoone, G. and Wlodkowic, D. (2015). Integrated microfluidic technology for sub-lethal and behavioral marine ecotoxicity biotests. SPIE Microtechnologies. doi:10.1117/12.2180692
Bender, S., Castorena-Gonzalez, J., Garro, M., Reyes-Aldasoro, C., Sowers, J., DeMarco, V. … Martinez-Lemus, L. (2015). Regional Variation in Arterial Stiffening and Dysfunction in Western Diet-Induced Obesity.
Solis-Lemus, J.A., Huang, Y., Wlodkowic, D. and Reyes-Aldasoro, C.C. (2015). Microfluidic environment and tracking analysis for the observation of Artemia Franciscana. Machine Vision of Animals and their Behaviour Workshop 2015. doi:10.5244/c.29.mvab.4
Blazakis, K., Reyes-Aldasoro, C., Styles, V., Venkataraman, C. and Madzvamuse, A. (2014). An optimal control approach to cell tracking. Inverse Problems, from Theory to Application 26-28 August, Bristol, UK.
Bowyer, S., Kanthou, C. and Reyes-Aldasoro, C. (2014). Analysis of capillary-like structures formed by endothelial cells in a novel organotypic assay developed from heart tissue. Medical Image Understanding and Analysis 9-11 July, London.
(2014). Medical Image Understanding and Analysis 2014. Medical Image Understanding and Analysis 9-11 July, London UK.
Doulgerakis, M., Argyriou, V., Tzimiropoulos, G. and Pierscionek, B.K. (2014). Non-Intrusive Action Symmetry Measurement for Dementia and Rehabilitation.
Unger, J., Schuster, M., Hecker, D.J., Schick, B. and Lohscheller, J. (2014). A Wavelet-based Approach for Analyzing Non-Stationary Phonation Sequences from Endoscopic High-Speed Videos.
Flight, R., Landini, G., Styles, I.B., Shelton, R., Milward, M. and Cooper, P. (2014). Semi-Automated Cell Counting in Phase Contrast Images of Epithelial Monolayers.
Udomchaiporn, A., Coenen, F., Sluming, V. and García-Fiñana, M. (2014). 3-D MRI Brain Scan Classification of Epilepsy versus Non-Epilepsy.
Hernández, M.D.C.V., Kim, J.-.I., Whiteford, I., Qiu, X., Wardlaw, J.M. and Park, J. (2014). Automatic Hippocampal Multimodal Assessment for Studies of Stroke and Small Vessel Disease.
Zhang, J., McKenna, S.J., Zhang, J., Coats, M. and Carey, F.A. (2014). Analysing the Surface Morphology of Colorectal Polyps: Differential Geometry and Pit Pattern Prediction.
Khazendar, S., Farren, J., Al-Assam, H., Du, H., Sayasneh, A., Bourne, T. … Jassim, S. (2014). Automatic Identification of Early Miscarriage Based on Multiple Features Extracted From Ultrasound Images.
Fordyce, N., McKenna, S.J., Hacker, C. and Lucocq, J. (2014). Finding Golgi Stacks in Electron Micrographs.
Fiorini, S., Ballerini, L., Trucco, E. and Ruggeri, A. (2014). Automatic Generation of Synthetic Retinal Fundus Images.
Yu, T.Y., Dehghani, H., Brain, K.L., Syeda, F., Holmes, A., Kirchhof, P. … Fabritz, L. (2014). New Optical Mapping Design and Automated Algorithms for Cardiac Electrophysiology.
Körner, M., Krishna, M.V., Süße, H., Ortmann, W. and Denzler, J. (2014). Regularized Geometric Hulls for Nucleus Segmentation from Microscopy Images.
Emrith, K., Slabaugh, G.G., Poullis, A., Groves, C. and Smith, M.L. (2014). Photometric Stereo Reconstruction for Surface Analysis of Mucosal Tissue.
Huang, T., Hacker, C., Lucocq, J. and McKenna, S.J. (2014). Detecting and Segmenting Nanodiscs in Immuno-Electron Micrographs.
Cury, C., Glaunès, J.A., Chupin, M. and Colliot, O. (2014). Fast Template-based Shape Analysis Using Diffeomorphic Iterative Centroid.
Constantinou, I., Pattichis, M.S., Tziakouri, C., Pattichis, C.S. and Petroudi, S. (2014). Multiscale AM-FM Models and Instantaneous Amplitude Evaluation for Mammographic Density Classification.
Al-Baddai, S., Al-Subari, K., Tomé, A.M., Volberg, G. and Lang, E.W. (2014). Combining EMD with ICA to Analyze Combined EEG-fMRI Data.
Ahmad, J., Sun, J., Smith, L.N. and Smith, M.L. (2014). Non-Contact Pulmonary Functional Testing Through an Improved Photometric Stereo Approach.
Zhang, L., Fisher, M. and Wang, W. (2014). Retinal Vessel Segmentation using Gabor Filter and Textons.
Sahrim, M., Nixon, M.S. and Carare, R. (2014). On Bloodvessel Branching Analysis for the Detection of Alzheimer's Disease.
Khadidos, A., Sanchez, V. and Li, C.-.T. (2014). Active Contours with Weighted External Forces for Medical Image Segmentation.
Nketia, T.A., Rittscher, J. and Noble, J.A. (2014). Utilizing Phase Retardation Features for Segmenting Cells in Phase Contrast Microscopy Images.
Jaccard, N., Szita, N. and Griffin, L.D. (2014). Trainable Segmentation of Phase Contrast Microscopy Images Based on Local Basic Image Features Histograms.
Correa, J., Auer, M. and Skinner, D. (2014). Integrated Tools for Next Generation Bioimaging.
Okuboyejo, D., Olugbara, O.O. and Odunaike, S. (2014). Unsupervised Restoration of Hair-Occluded Lesion in Dermoscopic Images.
Vasconcelos, M.J.M. and Rosado, L. (2014). Automatic Reflection Detection on Dermatological Images Acquired via Mobile Devices.
Kolár, R. and Podlipna, P. (2014). Analysis of Images from Optical Coherence Tomography for the Nanoparticle Transport.
Ferrarese, F.P. and Larsson, J. (2014). Challenges in Functional Imaging of the Visual Cortex: Data-driven Model-agnostic Estimation of Population Receptive Fields.
Cheng, D.-.C. and Liu, S.-.H. (2014). Automated Vessel Boundary Detection Using 3D Expansion of Dynamic Programming.
Bowyer, S., Kanthou, C. and Reyes-Aldasoro, C.C. (2014). Analysis of Capillary-like Structures Formed by Endothelial Cells in a Novel Organotypic Assay Developed from Heart Tissue.
(2014). Medical Image Understanding and Analysis - MIUA 2014. 18th Annual Conference, Egham, UK, July 9-11, 2014. Proceedings.
Bakas, S., Chatzimichail, K., Labbé, B., Hunter, G., Sidhu, P.S. and Makris, D. (2014). Fast Segmentation of Focal Liver Lesions in Contrast-Enhanced Ultrasound Data.
He, W., Kibiro, M., Juette, A., Hogg, P., Denton, E.R.E. and Zwiggelaar, R. (2014). A Novel Breast Image Preprocessing For Full Field Digital Mammographic Segmentation and Risk Classification.
Janssens, T., Vanhees, I., Gunst, J., Owen, H., Berghe, G.V.D. and Grandas, F.G. (2014). Automated Histological Quantification of Trabecular Bone Tissue in Critical Illness.
Okashi, O.A., Du, H., Selway, J.L., Lelliott, C., Maguire, S., Melvin, D. … Al-Assam, H. (2014). Automatic Ribs Segmentation and Counting From Mouse X-ray Images.
Schenk, F., Urschler, M., Aigner, C., Roesner, I., Aichinger, P. and Bischof, H. (2014). Automatic Glottis Segmentation from Laryngeal High-Speed Videos Using 3D Active Contours.
Soltaninejad, M., Ye, X., Yang, G., Allinson, N.M. and Lambrou, T. (2014). Brain Tumour Grading in Different MRI Protocols using SVM on Statistical Features.
Soltaninejad, M., Lambrou, T., Qureshi, A., Allinson, N.M. and Ye, X. (2014). A Hybrid Method for Haemorrhage Segmentation in Trauma Brain CT.
Phillips, M., Barrington, S., Hill, D.L.G. and Marsden, P. (2014). Comparison of Threshold-Based Segmentation Methods on Pre- and Post-Therapy PET Scans.
Nelson, C.J., Dixon, M., Laissue, P. and Obara, B. (2014). Speeding Up Active Mesh Segmentation by Local Termination of Nodes.
Meah, C., Marshall, R., Claridge, E., Bongs, K. and Styles, I.B. (2014). A Simulation Toolbox For Biomedical Plenoptic Imaging.
Margeta, J., Criminisi, A., Lee, D.C. and Ayache, N. (2014). Recognizing Cardiac Magnetic Resonance Acquisition Planes.
Soukup, J., Lasan, M. and Sroubek, F. (2014). Segmentation of Individual Cells in Phase Contrast Microscopy Images.
Purwani, S., Cootes, T.F. and Twining, C.J. (2014). Ensemble Registration: Combining Groupwise Registration and Segmentation.
Namburete, A.I.L., Stebbing, R.V. and Noble, J.A. (2014). Diagnostic Plane Extraction from 3D Parametric Surface of the Fetal Cranium.
Pansiot, J., Revéret, L. and Boyer, E. (2014). Combined Visible and X-Ray 3D Imaging.
Qureshi, A. and Schetinin, V. (2014). Computer-Aided Segmentation and Estimation of Indices in Brain CT Scans.
Kanthou, C., Dachs, G., Lefley, D., Reyes-Aldasoro, C. and English, W. (2013). Endogenous VEGF isoform expression regulates tumour cell motility. 2013 NCRI Cancer Conference 3-6 November, Liverpool.
Griffiths, M.K., Reyes-Aldasoro, C. and Rodenberg, J.M. (2012). A Framework for Providing Research Applications as a Service Using the IOME Toolkit. Digital Research 2012 10-12 September, Oxford, UK.
Henry, K., Reyes-Aldasoro, C.C. and Renshaw, S.A. (2012). Exploring neutrophil behaviour in a zebrafish model of inflammation through the generation of novel parameters using MatLab algorithms. European Conference in Immunology 5-8 September, Glasgow UK.
Reyes-Aldasoro, C.C., Henry, K. and Renshaw, S.A. (2012). Tracking neutrophils in zebrafish: the use of synthetic data sets. Medical Image Understanding and Analysis 9-11 July, Swansea UK.
Kanthou, C., Ghareai, Z., Haagen, J., Lunt, S.J., Reyes-Aldasoro, C., Doeer, W. … Tozer, G.M. (2012). Inhibition of angiogenesis in the mouse heart by ionizing radiation. ACR 103rd Annual Meeting 31 Mar 2012 – 4 Apr 2012, Chicago IL.
Bhalerao, A., Pase, L., Lieschke, G.J., Renshaw, S.A. and Reyes-Aldasoro, C.C. (2012). Local affine texture tracking for serial registration of zebrafish images. doi:10.1109/ISBI.2012.6235577
Reyes-Aldasoro, C.C., Bjorndahl, M., Akerman, S., Ibrahim, J. and Tozer, G.M. (2011). An on-line chromatic and scale-space microvasculature-tracing analysis for transmitted light optical images. Medical Image Understanding and Analysis 14-15 July, London UK.
Reyes-Aldasoro, C., Bjorndahl, M., Akerman, S., Ibrahim, J. and Tozer, G.M. (2011). An on-line chromatic and scale-space microvasculature-tracing analysis for transmitted light optical images. Medical Image Understanding and Analysis 14-15 July, London, Uk.
Reyes-Aldasoro, C.C., Bjorndahl, M., Ibrahim, J., Akerman, S. and Tozer, G.M. (2010). A scale-space tracing algorithm for analysis of tumour blood vessel morphology from transmitted light optical images. 2010 NCRI Cancer Conference 31 Oct 2010 – 3 Nov 2010, Liverpool.
Kanthou, C., Reyes-Aldasoro, C.C. and Tozer, G.M. (2010). Signaling interactions between RhoGTPase and cAMP/cGMP influence endothelial responses to the vascular disrupting agent combretastatin A4 phosphate. 2010 NCRI Cancer Conference 31 Oct 2010 – 3 Nov 2010, Liverpool.
Williams, L., Fisher, M., Reyes-Aldasoro, C.C., Kanthou, C. and Tozer, G.M. (2010). A critical role for RhoA-GTPase signaling in the tumour vascular disrupting action of combretastatin A4-phosphate in vivo. 2010 NCRI Cancer Conference 31 Oct 2010 – 3 Nov 2010, Liverpool.
Reyes-Aldasoro, C., Williams, L.J., Akerman, S., Kanthou, C. and Tozer, G.M. (2010). Segmentation and morphological analysis of microvessels in immunostained histological tumour sections. Medical Image Understanding and Analysis 6-7 July, Warwick, Uk.
Griffiths, M.K., Reyes-Aldasoro, C., Savas, D. and Greenfield, T. (2009). IOME, A Toolkit for Distributed and Collaborative Computational Science and Engineering. UK e-science All Hands Meeting 7-9 December, Oxford, UK.
Reyes-Aldasoro, C., Zhao, Y., Coca, D., Billings, S.A., Kadirkamanathan, V., Tozer, G.M. … Renshaw, S.A. (2009). Analysis of immune cell function using in vivo cell shape analysis and tracking. Pattern Recognition in Bioinformatics 7-9 September, Sheffield, UK.
Akerman, S., Reyes-Aldasoro, C., Fisher, M., Pettyjohn, K.L., Bjorndahl, M., Evans, H. … Tozer, G.M. (2009). Microflow of fluorescently labelled red blood cells in tumours expressing single isoforms of VEGF and their response to VEGF-R tyrosine kinase inhibition. Micro and Nano Fluids 1-2 September, London, Uk.
Williams, L., Reyes Aldasoro, C.C., Kanthou, C. and Tozer, G. (2008). THE CONTRIBUTION OF THE RHO PROTEIN PATHWAY TO THE TUMOUR VASCULAR DISRUPTING ACTION OF CA-4-P. 58th Meeting of the British Microcirculation Society 1-2 April, London, UK.
Reyes-Aldasoro, C.C., Akerman, S. and Tozer, G.M. (2007). Measuring red blood cell velocity with a keyhole tracking algorithm. doi:10.1007/978-3-540-73044-6_210
Reyes Aldasoro, C.C., Akerman, S. and Tozer, G. (2007). RED BLOOD CELL TRACKING AND VELOCITY MEASUREMENT WITH A KEYHOLE MODEL OF MOVEMENT. British Microcirculation Society Annual Scientific Meeting and Symposium Belfast, UK.
Reyes Aldasoro, C.C., Akerman, S. and Tozer, G. (2006). Measurement of Fluorescently Labelled Red Blood Cell Velocity Using Self-Organising Maps. 56th Meeting of the British Microcirculation Society Dundee, UK.
Reyes Aldasoro, C.C., Wilson, I., Ameer-Beg, S., Vojnovic, B. and Tozer, G. (2005). Analysis of the effects of tumour vascular targeting drugs on the vascular permeability of experimental tumours through multiphoton microscopy. Microcirculation 2005: A Transatlantic Microcirculation Conference Durham, New Hampshire, USA.
Reyes Aldasoro, C.C., Wilson, I., Prise, V., Barber, P., Ameer-Beg, S., Vojnovic, B. … Tozer, G. (2005). Measurement of Vascular Permeability from Multiphoton Microscopy of Experimental Tumours. NCRI Cancer Conference Birmingham UK.
Bhalerao, A. and Reyes-Aldasoro, C.C. (2003). Volumetric Texture Description and Discriminant Feature Selection for MRI.
Reyes Aldasoro, C.C. and Bhalerao, A. (2003). Volumetric Texture Description and Discriminant Feature Selection for MRI. Information Processing in Medical Imaging Ambleside UK.
Reyes Aldasoro, C.C. and Aldeco, A.L. (2000). Image Segmentation and Compression using Neural Networks. Advances in Artificial Perception and Robotics CIMAT Guanajuato, Mexici.
Reyes-Aldasoro, C.C. and Kuhlmann, F. (1999). Telecommunications and Internet in the Future Society: Myths and Realities. doi:10.1109/ISCC.1999.780763
Reyes-Aldasoro, C.C., Akerman, S. and Tozer, G.M. Measuring Red Blood Cell Velocity with a Keyhole Tracking Algorithm. doi:10.1007/978-3-540-73044-6_210

Dataset

Reyes-Aldasoro, C. (2013). Synthetic Data for Neutrophil Analysis.
[publisher’s website]

Journal articles (86)

White, A., Ngan, K.H., Phelan, J., Ryan, K., Afgeh, S.S., Reyes-Aldasoro, C.C. … Garcez, A.D. (2023). Contrastive counterfactual visual explanations with overdetermination. Machine Learning. doi:10.1007/s10994-023-06333-w.
Ibadulla, R., Chen, T.M. and Reyes-Aldasoro, C.C. (2023). FatNet: High-Resolution Kernels for Classification Using Fully Convolutional Optical Neural Networks. AI, 4(2), pp. 361–374. doi:10.3390/ai4020018.
[publisher’s website]
Karabağ, C., Ortega-Ruíz, M.A. and Reyes-Aldasoro, C.C. (2023). Impact of Training Data, Ground Truth and Shape Variability in the Deep Learning-Based Semantic Segmentation of HeLa Cells Observed with Electron Microscopy. Journal of Imaging, 9(3), pp. 59–59. doi:10.3390/jimaging9030059.
[publisher’s website]
Ascencio-Cabral, A. and Reyes-Aldasoro, C.C. (2022). Comparison of Convolutional Neural Networks and Transformers for the Classification of Images of COVID-19, Pneumonia and Healthy Individuals as Observed with Computed Tomography. Journal of Imaging, 8(9). doi:10.3390/jimaging8090237.
Chow, B. and Reyes-Aldasoro, C. (2021). Automatic Gemstone Classification Using Computer Vision. Minerals, 12(1), pp. 60–60. doi:10.3390/min12010060.
[publisher’s website]
D’Amato, E., Reyes-Aldasoro, C.C., Consiglio, A., D’Amato, G., Faienza, M.F. and Zollino, M. (2021). Detection of Pitt–Hopkins Syndrome Based on Morphological Facial Features. Applied Sciences, 11(24). doi:10.3390/app112412086.
Madabhushi, A. and Reyes-Aldasoro, C.C. (2021). Special issue on computational pathology: An overview. Medical Image Analysis, 73, pp. 102151–102151. doi:10.1016/j.media.2021.102151.
Ananda, A., Ngan, K.H., Karabağ, C., Ter-Sarkisov, A., Alonso, E. and Reyes-Aldasoro, C.C. (2021). Classification and Visualisation of Normal and Abnormal Radiographs; A Comparison between Eleven Convolutional Neural Network Architectures. Sensors, 21(16), pp. 5381–5381. doi:10.3390/s21165381.
[publisher’s website]
Karabağ, C., Jones, M.L. and Reyes-Aldasoro, C.C. (2021). Volumetric Semantic Instance Segmentation of the Plasma Membrane of HeLa Cells. Journal of Imaging, 7(6). doi:10.3390/jimaging7060093.
Jaffari, R., Hashmani, M.A. and Reyes-Aldasoro, C.C. (2021). A Novel Focal Phi Loss for Power Line Segmentation with Auxiliary Classifier U-Net. Sensors, 21(8), pp. 2803–2803. doi:10.3390/s21082803.
[publisher’s website]
Bianconi, F., Kather, J.N. and Reyes-Aldasoro, C.C. (2020). Experimental Assessment of Color Deconvolution and Color Normalization for Automated Classification of Histology Images Stained with Hematoxylin and Eosin. Cancers, 12(11), pp. 3337–3337. doi:10.3390/cancers12113337.
[publisher’s website]
Karabağ, C., Jones, M.L., Peddie, C.J., Weston, A.E., Collinson, L.M. and Reyes-Aldasoro, C.C. (2020). Semantic segmentation of HeLa cells: An objective comparison between one traditional algorithm and four deep-learning architectures. PLOS ONE, 15(10). doi:10.1371/journal.pone.0230605.
Ortega-Ruiz, M.A., Karabağ, C., Garduño, V.G. and Reyes-Aldasoro, C.C. (2020). Morphological Estimation of Cellularity on Neo-Adjuvant Treated Breast Cancer Histological Images. Journal of Imaging, 6(10), pp. 101–101. doi:10.3390/jimaging6100101.
[publisher’s website]
Reyes-Aldasoro, C.C., Ngan, K.H., Ananda, A., d’Avila Garcez, A., Appelboam, A. and Knapp, K.M. (2020). Geometric semi-automatic analysis of radiographs of Colles’ fractures. PLOS ONE, 15(9). doi:10.1371/journal.pone.0238926.
Solís-Lemus, J.A., Sánchez-Sánchez, B.J., Marcotti, S., Burki, M., Stramer, B. and Reyes-Aldasoro, C.C. (2020). Comparative Study of Contact Repulsion in Control and Mutant Macrophages Using a Novel Interaction Detection. Journal of Imaging, 6(5), pp. 36–36. doi:10.3390/jimaging6050036.
Stiff, T., Echegaray-Iturra, F.R., Pink, H.J., Herbert, A., Reyes-Aldasoro, C.C. and Hochegger, H. (2020). Prophase-Specific Perinuclear Actin Coordinates Centrosome Separation and Positioning to Ensure Accurate Chromosome Segregation. Cell Reports, 31(8), pp. 107681–107681. doi:10.1016/j.celrep.2020.107681.
[publisher’s website]
Ortega-Ruíz, M.A., Karabağ, C., Garduño, V.G. and Reyes-Aldasoro, C.C. (2020). Estimation of cellularity in tumours treated with Neoadjuvant therapy: A comparison of Machine Learning algorithms. . doi:10.1101/2020.04.09.034348.
[publisher’s website]
Ortega-Ruiz, M.A., Karabağ, C., García Garduño, V. and Reyes-Aldasoro, C.C. (2020). Morphological estimation of Cellularity on Neo-adjuvant treated breast cancer histological images. . doi:10.1101/2020.04.01.020719.
[publisher’s website]
Solís-Lemus, J.A., Sánchez-Sánchez, B.J., Marcotti, S., Burki, M., Stramer, B. and Reyes-Aldasoro, C.C. (2020). Comparative study of contact repulsion in control and mutant macrophages using a novel interaction detection. . doi:10.1101/2020.03.31.018267.
[publisher’s website]
Mitchell, C., Caroff, L., Solis-Lemus, J.A., Reyes-Aldasoro, C.C., Vigilante, A., Warburton, F. … Knight, R. (2020). Cell Tracking Profiler: a user-driven analysis framework for evaluating 4D live cell imaging data. Journal of Cell Science. doi:10.1242/jcs.241422.
[publisher’s website]
Nouri, J., Vasilakos, I., Yan, Y. and Reyes-Aldasoro, C.-.C. (2019). Effect of Viscosity and Speed on Oil Cavitation Development in a Single Piston-Ring Lubricant Assembly. Lubricants, 7(10), pp. 88–88. doi:10.3390/lubricants7100088.
[publisher’s website]
Karabağ, C., Verhoeven, J., Miller, N.R. and Reyes-Aldasoro, C.C. (2019). Texture Segmentation: An Objective Comparison between Five Traditional Algorithms and a Deep-Learning U-Net Architecture. Applied Sciences, 9(18), pp. 3900–3900. doi:10.3390/app9183900.
[publisher’s website]
Karabağ, C., Jones, M.L., Peddie, C.J., Weston, A.E., Collinson, L.M. and Reyes-Aldasoro, C.C. (2019). Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy. Journal of Imaging, 5(9), pp. 75–75. doi:10.3390/jimaging5090075.
[publisher’s website]
Pazhakh, V., Ellett, F., Croker, B.A., O’Donnell, J.A., Pase, L., Schulze, K.E. … Lieschke, G.J. (2019). β-glucan–dependent shuttling of conidia from neutrophils to macrophages occurs during fungal infection establishment. PLOS Biology, 17(9). doi:10.1371/journal.pbio.3000113.
[publisher’s website]
Karabag, C., Verhoeven, J., Miller, N.R. and Reyes-Aldasoro, C.C. (2019). Texture Segmentation: An Objective Comparison between Traditional and Deep-Learning Methodologies. . doi:10.20944/preprints201908.0001.v1.
[publisher’s website]
Verhoeven, J., Miller, N., Daems, L. and Reyes-Aldasoro, C. (2019). Visualisation and Analysis of Speech Production with Electropalatography. Journal of Imaging, 5(3), pp. 40–40. doi:10.3390/jimaging5030040.
[publisher’s website]
Solís-Lemus, J.A., Stramer, B., Slabaugh, G. and Reyes-Aldasoro, C.C. (2019). MacroSight: A novel framework to analyze the shape and movement of interacting macrophages using MAtLABR †. Journal of Imaging, 5(1). doi:10.3390/jimaging5010017.
Pazhakh, V., Ellett, F., O’Donnell, J.A., Pase, L., Schulze, K.E., Greulich, R.S. … Lieschke, G.J. (2019). β-glucan dependent shuttling of conidia from neutrophils to macrophages occurs during fungal infection establishment. . doi:10.1101/512228.
[publisher’s website]
(2018). Guest Editorial: Computer Vision in Cancer Data Analysis. IET Computer Vision, 12(8), pp. 1047–1048. doi:10.1049/iet-cvi.2018.5606.
[publisher’s website]
Karabağ, C., Jones, M., Peddie, C., Weston, A., Collinson, L. and Reyes-Aldasoro, C.C. (2018). Modelling the nuclear envelope of HeLa cells. . doi:10.1101/344986.
Kather, J.N., Berghoff, A.S., Ferber, D., Suarez-Carmona, M., Reyes-Aldasoro, C.C., Valous, N.A. … Halama, N. (2018). Large-scale database mining reveals hidden trends and future directions for cancer immunotherapy. OncoImmunology. doi:10.1080/2162402X.2018.1444412.
Leandrou, S., Petroudi, S., Kyriacou, P.A., Reyes-Aldasoro, C.C. and Pattichis, C.S. (2018). Quantitative MRI Brain Studies in Mild Cognitive Impairment and Alzheimer's Disease: A Methodological Review. IEEE Reviews in Biomedical Engineering, 11, pp. 97–111. doi:10.1109/rbme.2018.2796598.
[publisher’s website]
Jawaid, M.M., Narejo, S., Pirzada, N., Baloch, J., Reyes-Aldasoro, C.C. and Slabaugh, G. (2018). Automated Quantification of Non-Calcified Coronary Plaques in Cardiac CT Angiographic Imagery. International Journal of Advanced Computer Science and Applications, 9(7). doi:10.14569/ijacsa.2018.090731.
[publisher’s website]
Solís-Lemus, J.A., Stramer, B., Slabaugh, G.G. and Reyes-Aldasoro, C.C. (2017). Segmentation and Shape Analysis of Macrophages Using Anglegram Analysis. Journal of Imaging, 4(1). doi:10.3390/jimaging4010002.
Ulman, V., Maška, M., Magnusson, K.E.G., Ronneberger, O., Haubold, C., Harder, N. … Ortiz-De-Solorzano, C. (2017). An objective comparison of cell-tracking algorithms. Nature Methods, 14(12), pp. 1141–1152. doi:10.1038/nmeth.4473.
Jawaid, M.M., Riaz, A., Rajani, R., Reyes-Aldasoro, C.C. and Slabaugh, G. (2017). Framework for detection and localization of coronary non-calcified plaques in cardiac CTA using mean radial profiles. Computers in Biology and Medicine, 89, pp. 84–95. doi:10.1016/j.compbiomed.2017.07.021.
[publisher’s website]
Carlos Reyes-Aldasoro, C. and Slabaugh, G. (2017). Special issue: medical image understanding and analysis. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 5(5), pp. 317–317. doi:10.1080/21681163.2015.1081080.
[publisher’s website]
Jawaid, M.M., Rajani, R., Liatsis, P., Reyes-Aldasoro, C.C. and Slabaugh, G. (2017). A hybrid energy model for region based curve evolution – Application to CTA coronary segmentation. Computer Methods and Programs in Biomedicine, 144, pp. 189–202. doi:10.1016/j.cmpb.2017.03.020.
[publisher’s website]
Reyes-Aldasoro, C.C., Bjorndahl, M., Kanthou, C. and Tozer, G.M. (2017). Topological Analysis of the Vasculature of Angiopoietin-Expressing Tumours Through Scale-Space Tracing. pp. 285–296. doi:10.1007/978-3-319-60964-5_25.
[publisher’s website]
Fonseca, J., Nadimi, S., Reyes-Aldasoro, C.C., O׳Sullivan, C. and Coop, M.R. (2016). Image-based investigation into the primary fabric of stress-transmitting particles in sand. Soils and Foundations, 56(5), pp. 818–834. doi:10.1016/j.sandf.2016.08.007.
[publisher’s website]
Lee, J., Park, C.H., Oh, C.S., Han, K. and Kim, T.H. (2016). Coronary Computed Tomographic Angiography at 80 kVp and Knowledge-Based Iterative Model Reconstruction Is Non-Inferior to that at 100 kVp with Iterative Reconstruction. PLOS ONE, 11(9). doi:10.1371/journal.pone.0163410.
[publisher’s website]
Green, R.L., Simoes, F.A., Reyes-Aldasoro, C.C., Rossor, A.M., Scoto, M., Barri, M. … Hafezparast, M. (2016). A DYNC1H1 MUTATION IN AUTOSOMAL DOMINANT SPINAL MUSCULAR ATROPHY SHOWS THE POTENTIAL OF PHARMACOLOGICAL INHIBITION OF HISTONE DEACETYLASE 6 AS A TREATMENT FOR DISEASE ASSOCIATED CELLULAR PHENOTYPES. JOURNAL OF THE PERIPHERAL NERVOUS SYSTEM, 21(3), pp. 261–262.
Foote, C.A., Castorena-Gonzalez, J.A., Ramirez-Perez, F.I., Jia, G., Hill, M.A., Reyes-Aldasoro, C.C. … Martinez-Lemus, L.A. (2016). Arterial Stiffening in Western Diet-Fed Mice Is Associated with Increased Vascular Elastin, Transforming Growth Factor-β, and Plasma Neuraminidase. Frontiers in Physiology, 7. doi:10.3389/fphys.2016.00285.
[publisher’s website]
Pennington, K.A., Ramirez-Perez, F.I., Pollock, K.E., Talton, O.O., Foote, C.A., Reyes-Aldasoro, C.C. … Schulz, L.C. (2016). Maternal Hyperleptinemia Is Associated with Male Offspring’s Altered Vascular Function and Structure in Mice. PLOS ONE, 11(5). doi:10.1371/journal.pone.0155377.
[publisher’s website]
Kather, N.J., Weis, C.A., Zöllner, F.G. and Reyes-Aldasoro, C. (2016). Mapping tumour tissue: quantitative maps of histological whole slide images. Oncology News, 10(6), pp. 188–190.
Ramirez-Perez, F.I., Pennington, K.A., Pollock, K.E., Esangbedo, O., Foote, C.A., Reyes-Aldasoro, C.C. … Schulz, L.C. (2016). Maternal Hyperleptinemia Increases Arterial Stiffening and Alters Vasodilatoy Responses to Insulin in Adult Male Mice Offspring. FASEB JOURNAL, 30.
Blazakis, K.N., Madzvamuse, A., Reyes-Aldasoro, C.C., Styles, V. and Venkataraman, C. (2015). Whole cell tracking through the optimal control of geometric evolution laws. Journal of Computational Physics, 297, pp. 495–514. doi:10.1016/j.jcp.2015.05.014.
[publisher’s website]
Bender, S.B., Castorena-Gonzalez, J.A., Garro, M., Reyes-Aldasoro, C.C., Sowers, J.R., DeMarco, V.G. … Martinez-Lemus, L.A. (2015). Regional variation in arterial stiffening and dysfunction in Western diet-induced obesity. American Journal of Physiology-Heart and Circulatory Physiology, 309(4). doi:10.1152/ajpheart.00155.2015.
[publisher’s website]
Kather, J.N., Marx, A., Reyes-Aldasoro, C.C., Schad, L.R., Zöllner, F.G. and Weis, C.-.A. (2015). Continuous representation of tumor microvessel density and detection of angiogenic hotspots in histological whole-slide images. Oncotarget, 6(22), pp. 19163–19176. doi:10.18632/oncotarget.4383.
[publisher’s website]
Slabaugh, G. and Reyes-Aldasoro, C. (2015). Guest Editorial: Medical Image Understanding and Analysis. Annals of the British Machine Vision Association, 2015(1), pp. 1–2.
Yin, T., Ali, F.H. and Reyes-Aldasoro, C.C. (2015). A Robust and Artifact Resistant Algorithm of Ultrawideband Imaging System for Breast Cancer Detection. IEEE Transactions on Biomedical Engineering, 62(6), pp. 1514–1525. doi:10.1109/tbme.2015.2393256.
[publisher’s website]
Llad́o, X., Imiya, A., Mason, D., Reyes-Aldasoro, C.C., Aoki, K., Kudo, M. … Argyriou, V. (2015). Corrigendum to ‘Homage to Professor Maria Petrou’ [ Pattern Recognition Letters 48 (2014) 2–7]. Pattern Recognition Letters, 54, pp. 109–109. doi:10.1016/j.patrec.2015.01.006.
[publisher’s website]
Williams, L.J., Mukherjee, D., Fisher, M., Reyes-Aldasoro, C.C., Akerman, S., Kanthou, C. … Tozer, G.M. (2014). Anin vivorole for Rho kinase activation in the tumour vascular disrupting activity of combretastatin A-4 3-O-phosphate. British Journal of Pharmacology, 171(21), pp. 4902–4913. doi:10.1111/bph.12817.
[publisher’s website]
(2014). Homage to Professor Maria Petrou. Pattern Recognition Letters, 48, pp. 2–7. doi:10.1016/j.patrec.2014.06.008.
[publisher’s website]
Kanthou, C., Dachs, G.U., Lefley, D.V., Steele, A.J., Coralli-Foxon, C., Harris, S. … Tozer, G.M. (2014). Tumour Cells Expressing Single VEGF Isoforms Display Distinct Growth, Survival and Migration Characteristics. PLoS ONE, 9(8). doi:10.1371/journal.pone.0104015.
[publisher’s website]
Akerman, S., Fisher, M., Daniel, R.A., Lefley, D., Reyes-Aldasoro, C.C., Lunt, S.J. … Tozer, G.M. (2013). Influence of soluble or matrix-bound isoforms of vascular endothelial growth factor-A on tumor response to vascular-targeted strategies. International Journal of Cancer, 133(11), pp. 2563–2576. doi:10.1002/ijc.28281.
Reyes-Aldasoro, C. (2013). Cancer Image Analysis. Oncology News, 8(5), pp. 158–160.
[publisher’s website]
de Oliveira, S., Reyes-Aldasoro, C.C., Candel, S., Renshaw, S.A., Mulero, V. and Calado, A. (2013). Cxcl8 (IL-8) mediates neutrophil recruitment and behavior in the zebrafish inflammatory response. J Immunol, 190(8), pp. 4349–4359. doi:10.4049/jimmunol.1203266.
Henry, K.M., Pase, L., Ramos-Lopez, C.F., Lieschke, G.J., Renshaw, S.A. and Reyes-Aldasoro, C.C. (2013). PhagoSight: An Open-Source MATLAB® Package for the Analysis of Fluorescent Neutrophil and Macrophage Migration in a Zebrafish Model. PLoS ONE, 8(8).
Holmes, G.R., Anderson, S.R., Dixon, G., Robertson, A.L., Reyes-Aldasoro, C.C., Billings, S.A. … Kadirkamanathan, V. (2012). Repelled from the wound, or randomly dispersed? Reverse migration behaviour of neutrophils characterized by dynamic modelling. J R Soc Interface, 9(77), pp. 3229–3239. doi:10.1098/rsif.2012.0542.
Reyes-Aldasoro, C.C., Björndahl, M.A., Akerman, S., Ibrahim, J., Griffiths, M.K. and Tozer, G.M. (2012). Online chromatic and scale-space microvessel-tracing analysis for transmitted light optical images. Microvascular Research, 84(3), pp. 330–339. doi:10.1016/j.mvr.2012.09.002.
Pase, L., Layton, J.E., Wittmann, C., Ellett, F., Nowell, C.J., Reyes-Aldasoro, C.C. … Lieschke, G.J. (2012). Neutrophil-delivered myeloperoxidase dampens the hydrogen peroxide burst after tissue wounding in zebrafish. Curr Biol, 22(19), pp. 1818–1824. doi:10.1016/j.cub.2012.07.060.
Kadirkamanathan, V., Anderson, S.R., Billings, S.A., Zhang, X., Holmes, G.R., Reyes-Aldasoro, C.C. … Renshaw, S.A. (2012). The neutrophil's eye-view: Inference and visualisation of the chemoattractant field driving cell chemotaxis in vivo. PLoS ONE, 7(4). doi:10.1371/journal.pone.0035182.
Kanthou, C., Gharaei, Z., Haagen, J., Lunt, S.J., Reyes-Aldasoro, C.R.-.A.C., Doerr, W. … Tozer, G.M. (2012). Abstract 5723: Inhibition of angiogenesis in the mouse heart by ionizing radiation. Cancer Research, 72(8_Supplement), pp. 5723–5723. doi:10.1158/1538-7445.am2012-5723.
[publisher’s website]
Holmes, G.R., Dixon, G., Anderson, S.R., Reyes-Aldasoro, C.C., Elks, P.M., Billings, S.A. … Renshaw, S.A. (2012). Drift-Diffusion Analysis of Neutrophil Migration during Inflammation Resolution in a Zebrafish Model. Adv Hematol, 2012, p. 792163. doi:10.1155/2012/792163.
Lunt, S.J., Akerman, S., Hill, S.A., Fisher, M., Wright, V.J., Reyes-Aldasoro, C.C. … Kanthou, C. (2011). Vascular effects dominate solid tumor response to treatment with combretastatin A-4-phosphate. Int J Cancer, 129(8), pp. 1979–1989. doi:10.1002/ijc.25848.
Akerman, S., Reyes-Aldasoro, C.C., Fisher, M., Pettyjohn, K.L., Björndahl, M.A., Evans, H. … Tozer, G.M. (2011). Microflow of fluorescently labelled red blood cells in tumours expressing single isoforms of VEGF and their response to vascular targeting agents. Med Eng Phys, 33(7), pp. 805–809. doi:10.1016/j.medengphy.2010.09.006.
Reyes-Aldasoro, C.C., Griffiths, M.K., Savas, D. and Tozer, G.M. (2011). CAIMAN: an online algorithm repository for Cancer Image Analysis. Comput Methods Programs Biomed, 103(2), pp. 97–103. doi:10.1016/j.cmpb.2010.07.007.
Elks, P.M., van Eeden, F.J., Dixon, G., Wang, X., Reyes-Aldasoro, C.C., Ingham, P.W. … Renshaw, S.A. (2011). Activation of hypoxia-inducible factor-1α (Hif-1α) delays inflammation resolution by reducing neutrophil apoptosis and reverse migration in a zebrafish inflammation model. Blood, 118(3), pp. 712–722. doi:10.1182/blood-2010-12-324186.
Reyes-Aldasoro, C.C., Williams, L.J., Akerman, S., Kanthou, C. and Tozer, G.M. (2011). An automatic algorithm for the segmentation and morphological analysis of microvessels in immunostained histological tumour sections. J Microsc, 242(3), pp. 262–278. doi:10.1111/j.1365-2818.2010.03464.x.
Williams, L., Fisher, M., Reyes-Aldasoro, C.C., Kanthou, C. and Tozer, G.M. (2011). Abstract 1578: A critical role for RhoA-GTPase signaling in the tumor vascular disrupting action of combretastatin-A4-phosphate in vivo. Cancer Research, 71(8_Supplement), pp. 1578–1578. doi:10.1158/1538-7445.am2011-1578.
[publisher’s website]
Lunt, S.J., Gray, C., Reyes-Aldasoro, C.C., Matcher, S.J. and Tozer, G.M. (2010). Application of intravital microscopy in studies of tumor microcirculation. J Biomed Opt, 15(1), p. 11113. doi:10.1117/1.3281674.
Reyes-Aldasoro, C.C. (2009). Retrospective shading correction algorithm based on signal envelope estimation. Electronics Letters, 45(9), pp. 454–456. doi:10.1049/el.2009.0320.
Reyes-Aldasoro, C.C., Biram, D., Tozer, G.M. and Kanthou, C. (2008). Measuring cellular migration with image processing. Electronics Letters, 44(13), pp. 791–793. doi:10.1049/el:20080943.
Tozer, G.M., Akerman, S., Cross, N.A., Barber, P.R., Björndahl, M.A., Greco, O. … Kanthou, C. (2008). Blood vessel maturation and response to vascular-disrupting therapy in single vascular endothelial growth factor-A isoform-producing tumors. Cancer Res, 68(7), pp. 2301–2311. doi:10.1158/0008-5472.CAN-07-2011.
Reyes-Aldasoro, C.C., Wilson, I., Prise, V.E., Barber, P.R., Ameer-Beg, M., Vojnovic, B. … Tozer, G.M. (2008). Estimation of apparent tumor vascular permeability from multiphoton fluorescence microscopic images of P22 rat sarcomas in vivo. Microcirculation, 15(1), pp. 65–79. doi:10.1080/10739680701436350.
Reyes-Aldasoro, C.C., Akerman, S. and Tozer, G.M. (2008). Measuring the velocity of fluorescently labelled red blood cells with a keyhole tracking algorithm. J Microsc, 229(Pt 1), pp. 162–173. doi:10.1111/j.1365-2818.2007.01877.x.
Reyes-Aldasoro, C.C., Akerman, S. and Tozer, G.M. (2008). Measuring the velocity of fluorescently labelled red blood cells with a keyhole tracking algorithm (Journal of Microscopy (2008) 229, 1, (162-173)). Journal of Microscopy, 229(2), p. 384. doi:10.1111/j.1365-2818.2008.01946.x.
Reyes-Aldasoro, C.C., Akerman, S. and Tozer, G.M. (2008). Measuring the velocity of fluorescently labelled red blood cells with a keyhole tracking algorithm. Journal of Microscopy, 229(1), pp. 162–173. doi:10.1111/j.1365-2818.2007.01877.x.
Reyes-Aldasoro, C.C., Akerman, S. and Tozer, G.M. (2008). Measuring the velocity of fluorescently labelled red blood cells with a keyhole tracking algorithm (vol 229, pg 162, 2008). JOURNAL OF MICROSCOPY-OXFORD, 229(2), pp. 384–384.
Reyes Aldasoro, C.C. and Bhalerao, A. (2007). Volumetric texture segmentation by discriminant feature selection and multiresolution classification. IEEE Trans Med Imaging, 26(1), pp. 1–14. doi:10.1109/TMI.2006.884637.
Reyes-Aldasoro, C.C. and Bhalerao, A. (2006). The Bhattacharyya space for feature selection and its application to texture segmentation. Pattern Recognition, 39, pp. 812–826.
Bhalerao, A. and Reyes-Aldasoro, C.C. (2004). Volumetric texture description and discriminant feature selection for MRI. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2809, pp. 573–584.
Reyes-Aldasoro, C.C. and Bhalerao, A. (2003). Volumetric texture description and discriminant feature selection for MRI. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2732, pp. 282–293. doi:10.1007/978-3-540-45087-0_24.
Reyes-Aldasoro, C.C., Ganguly, A.R., Lemus, G. and Gupta, A. (1999). A hybrid model based on dynamic programming, neural networks, and surrogate value for inventory optimisation applications. Journal of the Operational Research Society, 50(1), pp. 85–94. doi:10.1057/palgrave.jors.2600658.
Reyes-Aldasoro, C.C., Ganguly, A.R., Lemus, G. and Gupta, A. (1999). A Hybrid Model Based on Dynamic Programming, Neural Networks, and Surrogate Value for Inventory Optimisation Applications. The Journal of the Operational Research Society, 50(1), pp. 85–85. doi:10.2307/3010392.
[publisher’s website]

Software (2)

Reyes-Aldasoro, C. PhagoSight: an open-source MATLAB package for the analysis of neutrophils and macrophage migration..
Reyes-Aldasoro, C., Griffiths, M.K., Savas, D. and Tozer, G.M. www.caiman.org.uk..

Theses/dissertations (2)

Reyes Aldasoro, C.C. Algorithm to Compute Reduced Costs on a Graph. (Master's Thesis)
Reyes Aldasoro, C.C. Multiresolution Volumetric Texture Segmentation. (PhD Thesis)

Professional activities

Editorial activity (11)

Reviewer for Pattern Recognition.
Reviewer for Pattern Recognition Letters.
Reviewer for IEEE Transactions on Medical Imaging.
Reviewer for IEEE Transactions on Image Processing.
Reviewer for IEEE Transactions on Neural Networks.
Reviewer for IEEE Transactions on Systems, Man, and Cybernetics.
Reviewer for Computational and Mathematical Methods in Medicine.
Reviewer for American Journal of Pathology.
Reviewer for Annals of the BMVA.
Assistant Editor for Oncology News.
Academic Editor PLOS ONE.

Events/conferences (3)

European Congress on Digital Pathology. (Conference) (2019). Organising Committee.
Medical Image Understanding and Analysis. Royal Holloway University of London (2014).
Description: Chair
Angiogenesis Network Conference. Sheffield University (2007).
Description: Co-chair

Other (3)

Webmaster for http://www.caiman.org.uk.
Webmaster for http://www.phagosight.org.
IET’s Vision & Imaging Technical Network Executive Committee Member.