Skip to:

  • Skip to main content
  • Skip to accessibility
City, University of London
  • Student Hub
  • Staff Hub
Search
Menu
Home
  • Prospective students
    • Courses
      • Undergraduate degrees
      • Apprenticeships
      • Foundation courses
      • Postgraduate taught degrees
      • Postgraduate research degrees
      • Short courses
      • Professional development courses
      • City Health courses
    • Apply
      • Entry requirements
      • How to apply
        • Undergraduate
        • Apprenticeship
        • Information for teachers
        • Postgraduate taught
        • Postgraduate research
          • Preparing your application
            • Preparing your research proposal
          • All PhD research projects
        • Booking Short Courses
          • Business and Management Short Courses
          • Computing Short Courses
          • Creative Industry Short Courses
          • Creative Writing Short Courses
            • The Novel Studio published alumni
          • Law Short Courses
          • Modern Languages Short Courses
      • Prospectus
        • Undergraduate
        • Postgraduate
      • Visas
        • Student visas
          • Applying from outside the UK
          • Applying from within the UK
          • Applying for a dependant visa
          • Preparing your application
          • Working in the UK
        • Standard Visitor visas
          • How to apply for a Standard Visitor Visa
          • Non-visa nationals
        • ATAS certificates
        • Brexit and European nationals
      • Study abroad programmes
        • Study abroad programme
        • Partnership programme
      • Clearing
        • Applying through Clearing
      • Alternative entry routes
        • Foundation programmes
        • Second-year students
        • Work experience
      • Contact Admissions
    • Finance
      • Funding options
      • Earn while you learn
      • How to pay
        • Payment methods
        • Fee schedules
        • Deposit refunds
      • Additional expenses
    • Accommodation and housing
      • Compare residential halls
      • Applying for halls
        • Undergraduate
        • Postgraduate
        • Clearing
      • Paying for halls
      • Private accommodation
        • Finding a place to live
        • Accommodation for families
      • Short-term accommodation
    • Open events and fairs
      • Campus tours
      • Online chats
        • Undergraduate online events
        • Postgraduate online events
        • Ask a student
      • University fairs
    • Student life
      • London experience
      • Local area
      • Sports
        • Sport clubs
        • Non-competitive sport
        • Competitive sport
      • Social activities and groups
      • Religion
      • Lesbian, gay, bisexual, transgender and queer plus
      • Volunteering
      • Student wellbeing
        • Mental health counselling
        • Learning support
        • Young, estranged students
        • Care leavers
        • Young adult carers
        • Personal tutoring programme
      • Learn another language
    • Career development
      • Placements, internships and employment opportunities
        • Micro-placements
      • Career pathways
      • Job prospects and graduate destinations
      • Careers team
    • Subjects
  • Research
    • Research centres and groups
    • Research impact
      • Research Excellence Framework
      • Research case studies
    • Research strategy
    • Research support
      • Grants and funding
      • Integrity and ethics
        • Research ethics
          • Principles
          • Approval process
          • Approval outcomes and appeals
          • External ethics approvals
        • Ethics guidance and resources
          • Participant information and consent
          • Recruiting participants from City
          • Records management
          • Research conducted abroad
          • FAQ
        • Research integrity
          • Framework for good practice in research
          • Research misconduct
      • Research data
        • Managing active research data
        • Digital research data and Figshare
      • Researcher development
    • Doctoral College
      • Funding and scholarships
      • Essential information
      • Meet the Team
      • Training and Development
        • Researcher Development Programme (DRDP)
      • Research Supervisors
  • For businesses
    • Start your business
      • Develop your startup idea
        • One-to-one startup advice
        • The Good Entrepreneur Festival
        • Startup Camp
        • Startup Seminars
        • Side Hustle
        • CitySpark Workshops
      • Launch your startup
        • Start-up visa
        • Launch Lab
    • Grow your business
      • Fund your business
      • Hire an academic consultant
      • Purchase our intellectual property
      • Companies formed
    • Develop your people
      • Bespoke training
      • My Home Life England
      • Degree apprenticeships for business
        • What is the apprenticeship levy?
    • Business impact case studies
    • Access our student talent
      • Recruit with us
      • Meet and support our students
        • Become a mentor
        • Employer engagement events
        • Micro-Placements
        • Industry Led Projects
      • Information for placement partners
        • Speech and Language Therapy training
  • Alumni and supporters
    • Alumni benefits
    • Global alumni network
      • Networks and Groups
        • City Alumni LinkedIn groups
        • MENA Alumni Board
        • US Alumni Board
      • Alumni Ambassadors
      • Special Interest Groups
      • Alumni News and stories
      • Alumni Events
    • Contact Alumni Relations
    • Support City
      • Donate to City
      • Volunteering
      • Your impact
  • News and events
    • News
    • Events
    • Social media directory
      • City social accounts
        • WeChat social accounts
      • School and Departmental accounts
  • About us
    • Schools and Departments
      • School of Policy & Global Affairs
        • About the School
          • Athena Swan
        • Department of Economics
        • Department of International Politics
        • Department of Sociology and Criminology
          • Postgraduate Sociology at City
      • School of Communication & Creativity
        • About the School
          • Athena Swan
          • Creatives in Residence
        • Department of Journalism
          • James Cameron Memorial Lecture
            • Lectures
            • Special awards
            • Winners
        • Department of Media, Culture and Creative Industries
          • English, Publishing and Creative Writing
          • Culture and the Creative Industries
          • Library and Information Science
          • Media and Communications
        • Department of Performing Arts
        • The Centre for Language Studies
      • Bayes Business School
      • School of Health & Psychological Sciences
        • About the School
          • Athena SWAN
          • Selection Process
          • Occupational Health Checks
          • Disclosure and Barring Service (DBS) enhanced check (formerly CRB)
          • MSc Nursing - RPL
          • Reference request
        • Department of Health Services Research and Management
          • Health Services Management at City
        • Department of Language and Communication Science
        • Department of Midwifery and Radiography
          • Radiography undergraduate learning contract
          • Postgraduate Midwifery at City
          • Radiography at City
        • Department of Nursing
        • Department of Optometry and Visual Sciences
        • Department of Psychology
      • School of Science & Technology
        • About the School
          • Athena SWAN
          • Aviation Management at City
          • Civil Engineering at City
          • Computer Science at City
          • Cyber Security MSc courses at City
          • Energy MSc courses at City
          • Library and Information Science at City
          • Maritime Management at City
          • Placements and internships
            • Placement and internship schemes
        • Department of Computer Science
        • Department of Mathematics
          • Potential PhD projects
        • Department of Engineering
      • The City Law School
        • Academic programmes
          • Undergraduate degree LLB
          • Graduate Entry Law GE LLB
          • Graduate Diploma in Law GDL
          • Master of Laws (LLM)
        • Professional programmes
        • Research and Scholarships
        • Athena Swan in The City Law School
        • Equality, Diversity and Inclusion at The City Law School
        • Barrister training
          • Bar Training
          • Pupillage Advice Service
        • Solicitor training
          • Future Solicitors Careers Advice Service (FSCAS)
          • The Solicitors' Qualifying Exam (SQE)
        • Law in real life (Law IRL)
          • Legal work placements
          • Court visits
          • Mock Trials
        • About The School
          • Prizes from The City Law School
          • Global Engagement
      • Dubai Centre
    • History
    • People
      • Academics
      • Research students
      • Students
      • Honorary graduates
      • Past students
      • Professional Services staff
      • International agents and representatives
      • Senior people
      • Extraordinary women
    • Facilities
      • Campuses
      • Libraries
      • Gym
      • University of London facilities
      • Specialist facilities
    • Work for us
      • Apply
      • Benefits
      • Career development
    • Vision and Strategy
      • Academic excellence
        • Rankings
        • Education
          • Flexible learning spaces
          • Active and collaborative learning
          • Term dates
        • Student statistics
      • Equality, diversity and inclusion
        • Equality, Diversity and Inclusion Strategy
        • Data and objectives
        • Staff networks
        • Digital Accessibility
      • Sustainable development
        • Get involved
        • Environmental Impact and Performance
      • Civic engagement
      • Social responsibility
        • Social responsibility in our outreach
        • Social responsibility in action
    • Governance and legal
      • Charter and Statutes
      • Rector
      • Council
        • Audit and Risk Committee
        • Corporate Governance and Nominations Committee
        • Remuneration Committee
        • Strategy and Finance Committee
        • Development Committee
      • Senate
        • Board of Studies
        • Collaborative Provision Committee
        • Educational Quality Committee
        • Research and Enterprise Committee
        • Senate Research Ethics Committee
      • Executive leadership
      • Financial statements
        • Financial Summary
      • Legal documents and policies
      • Committees
    • Global City
    • Contact us and find us
      • Find us
      • Contact us
      • Staff directory
    • Guidance on Coronavirus
      • Admissions advice during coronavirus
        • Coronavirus accommodation information
      • Latest updates
      • Advice for visitors to our campus
  • Student Hub
  • Staff Hub
  • Prospective students
    Prospective students
    • Courses
      • Undergraduate degrees
      • Apprenticeships
      • Foundation courses
      • Postgraduate taught degrees
      • Postgraduate research degrees
      • Short courses
      • Professional development courses
      • City Health courses
    • Apply
      • Entry requirements
      • How to apply
      • Prospectus
      • Visas
      • Study abroad programmes
      • Clearing
      • Alternative entry routes
      • Contact Admissions
    • Finance
      • Funding options
      • Earn while you learn
      • How to pay
      • Additional expenses
    • Accommodation and housing
      • Compare residential halls
      • Applying for halls
      • Paying for halls
      • Private accommodation
      • Short-term accommodation
    • Open events and fairs
      • Campus tours
      • Online chats
      • University fairs
    • Student life
      • London experience
      • Local area
      • Sports
      • Social activities and groups
      • Religion
      • Lesbian, gay, bisexual, transgender and queer plus
      • Volunteering
      • Student wellbeing
      • Learn another language
    • Career development
      • Placements, internships and employment opportunities
      • Career pathways
      • Job prospects and graduate destinations
      • Careers team
    • Subjects
  • Research
    Research
    • Research centres and groups
    • Research impact
      • Research Excellence Framework
      • Research case studies
    • Research strategy
    • Research support
      • Grants and funding
      • Integrity and ethics
      • Research data
      • Researcher development
    • Doctoral College
      • Funding and scholarships
      • Essential information
      • Meet the Team
      • Training and Development
      • Research Supervisors
  • For businesses
    For businesses
    • Start your business
      • Develop your startup idea
      • Launch your startup
    • Grow your business
      • Fund your business
      • Hire an academic consultant
      • Purchase our intellectual property
      • Companies formed
    • Develop your people
      • Bespoke training
      • My Home Life England
      • Degree apprenticeships for business
    • Business impact case studies
    • Access our student talent
      • Recruit with us
      • Meet and support our students
      • Information for placement partners
  • Alumni and supporters
    Alumni and supporters
    • Alumni benefits
    • Global alumni network
      • Networks and Groups
      • Alumni Ambassadors
      • Special Interest Groups
      • Alumni News and stories
      • Alumni Events
    • Contact Alumni Relations
    • Support City
      • Donate to City
      • Volunteering
      • Your impact
  • News and events
    News and events
    • News
    • Events
    • Social media directory
      • City social accounts
      • School and Departmental accounts
  • About us
    About us
    • Schools and Departments
      • School of Policy & Global Affairs
      • School of Communication & Creativity
      • Bayes Business School
      • School of Health & Psychological Sciences
      • School of Science & Technology
      • The City Law School
      • Dubai Centre
    • History
    • People
      • Academics
      • Research students
      • Students
      • Honorary graduates
      • Past students
      • Professional Services staff
      • International agents and representatives
      • Senior people
      • Extraordinary women
    • Facilities
      • Campuses
      • Libraries
      • Gym
      • University of London facilities
      • Specialist facilities
    • Work for us
      • Apply
      • Benefits
      • Career development
    • Vision and Strategy
      • Academic excellence
      • Equality, diversity and inclusion
      • Sustainable development
      • Civic engagement
      • Social responsibility
    • Governance and legal
      • Charter and Statutes
      • Rector
      • Council
      • Senate
      • Executive leadership
      • Financial statements
      • Legal documents and policies
      • Committees
    • Global City
    • Contact us and find us
      • Find us
      • Contact us
      • Staff directory
    • Guidance on Coronavirus
      • Admissions advice during coronavirus
      • Latest updates
      • Advice for visitors to our campus
  1. Home
  2. …
  3. Finance
  4. Funding options
  5. Medical imaging processing studentship
Finance
  • Funding options
  • Earn while you learn
  • How to pay
    • Payment methods
    • Fee schedules
    • Deposit refunds
  • Additional expenses

Medical imaging processing studentship

This studentship allows the student to dive deeper into the areas of medical image processing and computational topology and geometry.

  • Qualification Type: PhD
  • Hours: Full Time
  • Title of project: Geometric and topological methods for segmentation and analysis of three-dimensional cells observed with Electron Microscopy
  • Placed On: 1st February 2022
  • Closes: 15th May 2022, or until places have been filled.

Overview

Applications are invited for a PhD studentship in the Department of Computer Science. The successful candidate will have the opportunity to work on three-dimensional cell segmentation and analysis using methods from computational topology/geometry and topological data analysis.

Traditional approaches in medical image analysis (such as unsupervised traditional algorithms and, more recently, deep learning methodologies) do not fully incorporate the geometrical and topological properties of the data structures resulting in under/over-segmentation of cell nuclei as they rely heavily on variations of pixel intensity, texture or other local characteristics.

Recently, basic tools from topological data analysis have been applied successfully on tumour segmentation, diagnosis and classification, albeit on very limited data sets, consisting of standard, low-resolution, histological images.

This research project aims at devising new methods that combine advanced tools from topological data analysis and computational topology/geometry with image processing and deep learning methods to achieve in-depth analysis high resolution EM images of cancer cells.

The proposed research will afford the student a chance to go deep in the areas of medical image processing and computational topology/geometry. These skills are expected to be sought after highly by the industry and can also provide a robust foundation for an academic career.

The results of a successful doctoral thesis are expected to be of interest to the medical imaging community. The student will be encouraged to publish results of their research at leading international conferences and in top-tier journals.

Eligibility and requirements

The candidate should have an upper second class honours BSc (or equivalent, or higher) degree in computer science or mathematics. A Master’s degree and experience in the area would be an advantage. They should demonstrate aptitude for original research.

The candidate should possess very good mathematical skills and a solid background in image processing and computer vision, machine learning, and theory of algorithms. Knowledge in the context of computational geometry/topology would be an advantage.

A candidate who demonstrates exceptional aptitude in one or more of these areas (as evidenced, for instance, through strong academic credentials or research papers in reputable, peer-reviewed journals/conferences) may be accorded preference. The successful candidate should also be able to code comfortably in Python and Matlab.

A doctoral candidate is expected to meet the following pre-requisites for their PhD:

  1. Demonstrate a sound knowledge of their research area
  2. Achieve and demonstrate significant depth in at least a few chosen sub-areas relevant to their primary research area
  3. Demonstrate the ability to conduct independent research, including a critical assessment of their own and others’ research

Previous publications in high-quality papers in reputable peer-reviewed conferences and journals are desirable.

Funding

The studentship is for 3 years and will provide full coverage of tuition fees (Home and Overseas) and an annual tax-free stipend of £12,000.

Each student would also have the opportunity to earn around £2.2K pa on an average (max. is around £4.3K pa) through a teaching assistantship. We shall prioritise these scholarship holders while allocating the teaching assistantships.

How to apply

Initial informal enquiries should be addressed to Panos Giannopoulos or Constantino Carlos Reyes-Aldasoro.

  • Email Panos Giannopoulos
  • Email Constantino Carlos Reyes-Aldasoro

Visit our Computer science research degrees web page for further information on making a formal application.

When submitting your application, enter the title “Geometric and topological methods for segmentation and analysis of three-dimensional cells observed with Electron Microscopy” and you will automatically be considered for this studentship.

You do not need to submit a proposal as part of your application as the project has already been outlined.

The online application can be found in the ‘How to apply section’ in the web link above and should include the following supporting documents:

  • Copies of Degree Certificates and Transcripts in official English translation - original will be requested before an offer is made.
  • Official work e-mail addresses (not private ones) for two referees (one of which must be an academic).
  • Proof of English Language proficiency (minimum average score of 6.5 IELTS, with a minimum of 6.0 in each of the four components) if English is not your first language.
  • Passport.

The outcome of the selection process should be announced by the end of June. The successful candidate will formally start their doctorate either in July or in October 2022.

For queries regarding the application process, please email the School.

Equality, diversity and inclusion

City, University of London is committed to promoting equality, diversity and inclusion in all its activities, processes, and culture, for our whole community, including staff, students and visitors.

We welcome applications regardless of gender, sexual orientation, disability, marital status, race, nationality, ethnic origin, religion or social class. For more information on our approaches to encouraging an inclusive environment, please see our Equality, Diversity and Inclusion pages.

giCentre

  • giCentre Research Centre 

    Visit the Centre's research microsite for more information about the Centre, including areas of research, projects and related activities.

Help us to improve this page

City, University of London

  • Library Services
  • Moodle
  • Email
  • Staff directory
  • Term dates
  • Book a room
  • Schools and departments

Back to top

Contact us

Make an enquiry

  • Twitter
  • Facebook
  • Instagram
  • LinkedIn
  • YouTube
  • Weibo
  • Youku
  • WeChat
Social media directory

Find us

City, University of London
Northampton Square
London EC1V 0HB
United Kingdom

Campus map

Our global campuses

  • London
  • Dubai
  • Athena SWAN: Bronze Award
  • UKRI Research England logo

Useful links

  • Accessibility
  • Privacy policy
  • Cookies
  • City Store
  • Support City
  • Work for City
  • City Magazine
  • 中文

© 2023 City, University of London

University of London